Top Tweets for #tnseq
Excited to share our latest work on #smallproteins. We have designed an identification approach using #TnSeq that together other #omics and #bioinformatic approaches increases the number of genes of Mycoplasma pneumoniae from 690 to 997!
https://t.co/aFM4aURbif
Today I will be presenting my poster about using #TnSeq in Dickeya to figure out which genes it needs to grow in potato stems and tubers! 🌱🥔
Turns out that chemotaxis and motility are key!
P-025 in just a little bit under an hour. #2023ISMPMI
A self‐propagating, barcoded transposon system for the dynamic rewiring of genomic networks | Molecular Systems Biology
#tnseq https://t.co/5p0UoynX9s
New paper from the @FinlayLab out in Gut Microbes! First authors @StefanieVogt and @_AntonioSerapio used a combined #RNASeq and #TnSeq approach to investigate important adaptive responses of EHEC in the presence of the gut microbiota.
Dr. Stefanie Vogt (@StefanieVogt) and I are excited to share our latest research that explores the fascinating world of microbiota and pathogens, uncovering how Enterohemorrhagic E. coli (EHEC) responds to gut microbiota metabolites🦠🔬 https://t.co/kfYwhoGHuq
Finally finished my last project: #TnSeq. I'm preparing also a GitHub page. For the moment just the general pipeline workflow.
Starting soon a new, bigger, project! #cantwait to tell!
#sequencing #bioinformatics #pipeline #project
Read our latest story on how 2 Burkholderia PGPR use different strategies to colonize japonica and indica rice! @PHIM_research #TnSeq #PGPR #rice #ANR_Burkadapt
https://t.co/nzryKGipNp
Check our lab’s new paper on how bacteria process antibiotic stress at a genome-wide level, and the pathways involved in antibiotic tolerance @Rosconi_FA @BLSundaresh @LuisaNi05352959 @nemibg @tvanop #AMR #AntibioticTolerance #GenomeWideStress #TnSeq https://t.co/GLemKJWHFn
Very proud to have our recent manuscript exploring experimental and analytical approaches for improving the resolution of #TnSeq #functionalgenomics screens accepted @ACSSynBio! Take a look if you want to use Tn-Seq in your work!
https://t.co/X4Fx1h4970
Phage resistance profiling identifies new genes required for biogenesis and modification of the corynebacterial cell envelope https://t.co/wSfMKeFZKm #biorxiv_micrbio
Our latest paper from us @IoAStirling: identifying the essential genes in #Vibrio anguillarum by #TnSeq. Products of essential genes make for great potential drug targets & #vaccine candidates. Available #OpenAccess https://t.co/Kg9PH5kPD2
Kudos to Michaela for taking this over after i left @Uni_WUE and great to see this gene of my #tnseq screen during PhD, going to preprint and now published in @mbiojournal https://t.co/7FDb87tUi8 after several hypotheses. Now we know!
Alessandra Vitale, supervised by Leo Eberl and John A. Robinson, had her #IPMB_PhD_defense on "Genome-Wide Mutant Profiling to Identify Key Fitness Determinants in Human Pathogens". She exploited #Tnseq to characterize resistance mechanisms to #antibiotics 🧫🦠💊
Congrats! 👏👏👏
Many plant-associated #bacteria provide huge benefits to #agriculture. But which bacterial genes are relevant is largely unknown. My very smart friend @BeaCurious has published a review on how transposon insertion #sequencing can be utilised to provide this information #genetics
After the morning seminars on #CompetitionAssay, #TnSeq, #RBTnSeq & #WITS, the afternoon was dedicated to a hands-on practical course on the #inplanta competition assays performed to assess the fitness of #Xanthomonas mutants 💪
Day 3 of the @EuroXanth training school is #Bacterial #Fitness Day !
After a brief discussion on #CompetitionAssays by Alice Boulanger & myself, @macerwan describes #TnSeq and explains how to 1) Construct a library of insertion mutants and 2) Perform appropriate statistics
Our paper is out! We establish a model system to understand AMR development and biofilm formation in P. aeruginosa MPAO1 @pacbio @biorxivpreprint #systemsbiology #proteogenomics #tnseq #eskapepathogen #biofilms #microfluidics https://t.co/cPcx7aY5p8
Recuerda que cuando asistes a #SOMICH2019 puedes participar en el Minitaller #CRISPR #TNSEQ @cjblondel @IBiomedicas @uandresbello Registrate hasta hoy (30AUG) con inscripción temprana y envía tu resumen hasta el 15 de septiembre https://t.co/sia98IadH2
Very excited to share my first big projet from my postdoc with @whiteleylab!!
https://t.co/Tz2gJBAD8v
@GaTechMicrobes @GT_Sciences @PNASNews
#TnSeq #MicrobialInteractions #OralMicrobes #EssentialGenome #AggregatibacterActinomycetemcomitans 1/
And I will be discussing the adaptation of #Xanthomonas #campestris to its #cauliflower host and the use of #TnSeq to perform genome-wide screening of #bacterial #fitness determinants !! Come take a look at poster #554-P2 on Tuesday and Wednesday 😀
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