James Baye

PhD candidate @SCICambridge studying the single-cell RNA sequencing measurement process. Interest in cell fate transitions, stochastic systems, tipping points.

[James Baye @jmsbaye]

@AirbnbHelp There has been no new case opened on our account and no news of the pending direct debit. Can we please get clarification on this.

[James Baye @jmsbaye]

Airbnb is charging us 100€ for a 15€ chopping board. They accepted a fake invoice from a host without proof of purchase which breaches their terms of service. They are now forcing a direct debit on our account. What does one do when faced with a monopoly? @AirbnbHelp #extorsion

[James Baye @jmsbaye]

@Jascree @AirbnbHelp Sorry that’s happening to you Cree. @AirbnbHelp Claims Support is supporting widespread fraud. Have you been able to review their terms of service? I suspect they have breached them in several ways in your case too.

[James Baye @jmsbaye]

This issue started on 4th September. We have tried to resolve through Airbnb Claims support and called Airbnb support on multiple occasions, all of which have been met with silence and avoidance. What's happening @AirbnbHelp? @airbnb_fr @Airbnb @Airbnb_uk @AirbnbPolicy @airbnb

[James Baye @jmsbaye]

@Airbnb also reimbursed the host breaching their terms of service again! This incident was during a power outage which we specified multiple times in writing and should be excluded from reimbursement based on @Airbnb's own clauses.

[James Baye @jmsbaye]

High Performance Long Read Assay Enables Contiguous Data up to 10Kb on Existing Illumina Platforms https://t.co/CmsYpG4Jt3 #illumina

[James Baye @jmsbaye]

I'm glad I could present the thesis @IanSudbery @m_hemberg, thank you for taking the time to examine with such depth, it really means a lot. Stay tuned for the paper! @KevinChalut @C_Mulas

[Martin Hemberg @m_hemberg]

Congratulations @jmsbaye ! People interested in single cell measurement errors should start getting excited about his forthcoming paper.

[James Baye @jmsbaye]

@C_Mulas Git/Github.
comments/suggest changes -> create issue // pull requests
troubleshooting -> add unit tests or other regression tests

[Dominic Grün @dominic_grun]

Important paper showing that the NB normalisation of SCTransform may boil down to a simple offset fit that can be solved analytically and corresponds to an intercept-only rank-one GLM-PCA. Promising and fast approach to normalisation.
https://t.co/ZDqo6TAqiG

[James Baye @jmsbaye]

@constantAmateur Thanks for the post! I've often avoided symlinks out of concern for the coupling between projects. If the path to source changes, could symlinks update automatically? My current preference for data re-use has been to host data on cloud and make a small data-loader package.

[James Baye @jmsbaye]

Glad to see that the ZINB hype and concept of imputation in single-cell RNAseq is being challenged: https://t.co/NGl8vh9xkJ

[Eric Topol @EricTopol]

The graph by @MaxCRoser of #COVID19 testing and timing countries per million people vs deaths is a very important explanation for the variance of outcomes. I've added more countries to Max's graph and the relationship sticks
https://t.co/GfuYQuUVQc

[James Baye @jmsbaye]

Homology of #SARSCoV2 with MMR. Increased rubella antibody titres in SARS-CoV-2 infected patients. Could there be a potential for MMR to grant cross-protective immunity? Definitely worth looking into
@SCICambridge

[ludovic vallier @VallierLab]

This preprint made my day. Very exciting hypothesis from Robin Franklin @SCICambridge. MMR vaccine could protect against Covid19 explaining why kids are protected. Could it be that simple? I want to believe after all this is Easter.

https://t.co/AHGmQL9exi

[James Baye @jmsbaye]

I'm happy to share the #coronavirus #MutualAid request system that we set up for our ward (Romsey, Cambridge). Automatic request dispatching and tracking with simple tools. All open source. @CovidAidUK @queercarenet Can you help spread the resource? https://t.co/vv4LsYgUHP

[NimwegenLab @NimwegenLab]

When analyzing scRNA-seq data, shouldn't it be possible to rigorously correct for both the Poisson sampling noise that is intrinsic to the process of gene expression, and the sampling noise introduced by the measurement (i.e. mRNA capture and sequencing)? Well, yes! 1/n

[Dr. Jean Fan @JEFworks]

Check out our @PNASNews paper on 10K gene #spatialtranscriptomics by #MERFISH with ∼80% detection efficiency: https://t.co/nIEHXuabSr

We infer #RNAvelocity in situ + pseudotime to reveal genes with #cellcycle dependent expression + more

#singlecell #bioinformatics #BigData

[James Baye @jmsbaye]

@pablonavarroLAB https://t.co/3J1Tntgy22 People section

[Evan Macosko @macosko]

With Fei Chen's lab, we introduce Slide-seq, for genome-wide expression profiling in tissue slices at 10-micron resolution. A single scientist can prepare dozens of slides in one day. Developed by two amazing students, @SGRodriques and Bob Stickels. https://t.co/YIyPc47NFG