Jérôme Arnoux @jpjarnoux.bsky.social

PhD in Bioinformatics | Postdoc @IceLab_umea
Using AI/ML to discover new antibiotics against resistant bacteria 🦠 #AMR #RNAseq #AI #MachineLearning

[Sebastian S. Cocioba🪄🌷 @ATinyGreenCell]

Fresh HMM haul just dropped 👇

[Jérôme Arnoux @jpjarnoux.bsky.social @jpjarnoux]

Happy to announce that I've started my postdoctoral position at @IceLab_umea! 🎉 My project focuses on developing AI models (ML/DL) to predict protein levels from RNA-seq data in bacterial infections, to identify new therapeutic targets to combat #AMR🦠🤖 #AIforScience #Postdoc

[Jérôme Arnoux @jpjarnoux.bsky.social @jpjarnoux]

@erikgarrison Hi!

I recently completed my PhD in comparative pangenomics, focusing on interspecies genomic diversity and metabolism.

I'm now looking for a postdoc to continue research in pangenomic analysis & AI.

I am very interested in this opportunity. I'd love to discuss how to apply!

[LABGeM @genolabgem.bsky.social @GenoLabgem]

Happy to have presented 20 years of microbial genomics with MicroScope @jobim2024
@IFB_Bioinfo @Genopole @GenoUMR_GM @CEA_Jacob_

[LABGeM @genolabgem.bsky.social @GenoLabgem]

Si much new cool functionalities #pangenome

[INRAE MaIAGE @INRAE_MaIAGE]

@GUILLAUMEGAUTRE and @j_main_guy are waiting for you at poster 108 at @jobim2024 (Tuesday, June 25, from 5:45 to 6:45 p.m.) to talk about « PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomes ».
@GenoLabgem @CEA_Jacob_ @GenoUMR_GM

[LABGeM @genolabgem.bsky.social @GenoLabgem]

@j_main_guy and @GUILLAUMEGAUTRE are ready to present PanGGOLiN v2 #JOBIM2024
@GenoUMR_GM @CEA_Jacob_

[SEA Data @SEADataConf]

We now start again our session with Jerome Arnoux presenting
Integrating Complex Pangenome Graphs

[Jérôme Arnoux @jpjarnoux.bsky.social @jpjarnoux]

Proud to have presented my work on Integrating complex pangenome graphs at SEAGRAPH at ICDE 2024! It was a great opportunity to collaborate with experts in the field of graph databases !

@GenoLabgem @GenoUMR_GM
@CEA_Jacob_

#SEAGRAPH #ICDE2024 #pangenomic

[Jérôme Arnoux @jpjarnoux.bsky.social @jpjarnoux]

🌊 Exciting Update! 🌟

Thrilled to be at the SeaGraph workshop at ICDE 2024 conference in Utrecht today, presenting our work on "Integrating complex pangenome graphs"! 🚀📊

@sdumbrav @GUILLAUMEGAUTRE
@GenoLabgem @GenoUMR_GM @CEA_Jacob_

#SeaGraphWorkshop #ICDE2024 #pangenomic

[Jérôme Arnoux @jpjarnoux.bsky.social @jpjarnoux]

Pleased to share my work in front of other PhD students 🎓
#pangenomic #bacteria #comparativegenomics

[LABGeM @genolabgem.bsky.social @GenoLabgem]

Today @jpjarnoux is presenting his developments for comparative pangenomics at doctoral school SDSV @UnivParisSaclay @GenoUMR_GM

[GENOSCOPE/UMR Genomique Metabolique @GenoUMR_GM]

👏Félicitations à l'équipe du @GenoLabgem pour ce prix #OpenScience du @sup_recherche pour le logiciel libre #PPanGGoLin dédié à l'analyse de pangénomes procaryotes pour étudier l'évolution ou l'écologie des microbes.
@UnivEvry @Genopole @CEAParisSaclay

[Institut de Biologie François Jacob @CEA_Jacob_]

[#prix #scienceouverte] Retour sur la 2e éd. des Prix Science ouverte logiciel libre du @sup_recherche qui a eu lieu en novembre dernier.
Le logiciel #PPanGGOLin , développé par @GenoLabgem , a reçu le prix espoir catégorie "Scientifique & technique".
👉https://t.co/IvHabos9dA

[Adelme Bazin @axbazin]

It also introduces methods to use PPanGGOLiN pangenome as "references" to annotate your genomes, to compare regions of genomic plasticity together to study within-species HGT, along with new output file formats to integrate better with other bioinformatics tools!

[Adelme Bazin @axbazin]

After a year of development, PPanGGOLiN 2.0.0 is now out in the wild !! https://t.co/mdkkaqdIQa
Its major new features include a way to integrate any annotation from any tool in the graph, an improved data structure to store your pangenomes, and a brand new documentation !

[PANGAIA Project @PangaiaProject]

Ben Langmead, will propose a talk about “Movi: a fast and cache-efficient full-text pangenome index”

Monday, January 8 at 4 p.m. CET, by videoconference at https://t.co/xMWXwKjDyk.

[LABGeM @genolabgem.bsky.social @GenoLabgem]

The PPanGGOLiN team #pangenome
@jpjarnoux @vallenet @axbazin @GUILLAUMEGAUTRE et Alexandra Calteau

@CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo @Genopole @fr_genomics

[LABGeM @genolabgem.bsky.social @GenoLabgem]

@GUILLAUMEGAUTRE is presenting the PPanGGOLiN story

@CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo

[LABGeM @genolabgem.bsky.social @GenoLabgem]

PPanGGOLiN is nominated for the prize « Science ouverte du logiciel libre de la recherche »

@GUILLAUMEGAUTRE @axbazin @jpjarnoux @j_main_guy @vallenet et Alexandra Calteau

@CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo