Bram Koster

Interested in electron microscopy in all its flavors, but lately especially in combining cryo electron tomography with artificial intelligence.

[Bram Koster @KosterLab]

@zauggj Congrats! Providing tomograms with annotations will give an enormous boost for further developments for segmentation and identification!

[Bram Koster @KosterLab]

@conesamingo @instructhub @InstructI2PC @scipion_em It was great, also for those joining in from remote! Congratulations!

[cryoEM Papers @cryoEM_Papers]

Precision super-resolution cryo-correlative light and electron microscopy for rapid in situ structural analyses of optogenetically-positioned organelles https://t.co/74zwUa9u0B

[Bram Koster @KosterLab]

Today visiting the Francis Crick Institute in London! An amazing place where they perform awesome electron microscopy on such a wide variety of samples!

[Bram Koster @KosterLab]

@WimJHH @DTegunov @WimJHH, as you know Wim, in the Netherlands most are not fundamentalists: I agree with @DTegunov - it is (just) a (very good) prediction!

[Alister Burt @AlisterBurt]

napari-animation has had a much needed upgrade! 🥳
The @napari_imaging plugin now includes contributions from 10 people 😍🧑‍🤝‍🧑
Special thanks to @KA_Hutchings, a talented student from @cjrlab this summer, for many significant usability improvements! ⚒️
https://t.co/zqLuLYmFGk

[Zhen Chen @ZhenChentccz]

We optmized in situ cryoET to achieve 6 A reconstructions of mouse sperm doublets! The unique tertiary structures allow de novo protein identification of novel sperm proteins by computationally searching in the AlphaFold2 library of entire mouse proteome! https://t.co/xxqPEVE1YR

[Bram Koster @KosterLab]

@RoyalMicroSoc @embl @emblebi @BioImagingUK @EuroBioImaging @IoP_EMAG @WimJHH Wim and Ardan, congratulations!

[I2PC - Instruct Image Processing Center @InstructI2PC]

📢The speaker of the next I2PC Seminar Series on #CryoET will be Jorge Jiménez de la Morena from @CNB_CSIC
📔Talk: ScipionTomo: a cryoET framework.
⏰ Sept29th 15:00 Madrid GMT+2
https://t.co/WiZN081JCp

[eBIC Beamline @eBIC_Diamond]

This newly published review by eBIC staff discusses recent examples on how cryoET can be used to study membrane remodelling processes. Find the paper here:
https://t.co/Q89F07NI2R

[Bram Koster @KosterLab]

@InstructI2PC @LorenzLamm @helmholtz_ai That was a great talk!

[Lauren Ann Metskas Lab @LAMetskas]

Seeking a postdoc to build super-resolution cryo-fluorescence microscope (#CLEM, #teamtomo) in collaboration with Huang group of #PurdueEngineering. Info and application at https://t.co/2A4Mqq824Z.

Please RT!

[cryoEM Papers @cryoEM_Papers]

Correlative light electron microscopy using small gold nanoparticles as single probes. https://t.co/j81VANwqre

[cryoEM Papers @cryoEM_Papers]

HOPE-SIM, a cryo-structured illumination fluorescence microscopy system for accurately targeted cryo-electron tomography https://t.co/YxoLI6BRnD

[Slavica Jonic @slavica_jonic]

Check out #DeepHEMNMA in #ContinuousFlexPlugin (ver 3.2.0) for @scipion_em:
https://t.co/43T2sHp7mV
https://t.co/SI94uxwLwC

[WEBKNOSSOS @webknossos]

🐣 New feature 🐣

You can now download datasets in webKnossos using the Python library. Just follow the steps indicated in the UI and integrate it in your own scripts!

[Elizabeth Wright @erwright73]

Hello #teamtomo! Have you loved every FIB slice, tomogram & sub volume at #tomo2020? Great news! Andrew Leis & I will be co-chairing #tomo2024 & #tomo2026! We’ll be headed ‘down under’ to Melbourne, AUS in 2024 & ‘up North’ in Madison, WI USA in 2026! #koalas & #Badgers 🐨🦡❄️🔬

[Alex Hall @allopatry]

This recent paper in @Dev_Cell includes Serial Block Face Imaging on a @thermosciEMSpec Apreo Volume Scope followed by segmentation and visualization in Amira Software! Great study, and congrats to the authors.

[Bram Koster @KosterLab]

@TheVillaLab Thanks! This first session of the conference was already so inspiring with all the tomography enthousiasts in 3D to talk to! Looking forward to catch up at a next meeting!

[Bram Koster @KosterLab]

On my way to #tomo2022! So much looking forward to it! I can't wait to meet old friends and make new ones with those I only know by name from papers or twitter! So many awesome developments! First,  I have to bicycle to catch my train to be on time for the 1st session in 5 hrs.

[D-BIOL @ ETH Zurich @ETH_DBIOL]

How does the yeast nuclear pore complex ‘punch’ a hole in the nuclear envelope to create a functional transport channel? A recent collaborative study from the @KarstenWeisLab implicates the protein Brl1 in this membrane fusion event. More: https://t.co/E0pnJbvxLL