Logan Donaldson

Structural Biologist / Professor / York University / servant of @miko_and_mika - photography - pottery - running / that's Thunder Bay above me

[Logan Donaldson @logandonaldson]

Thank you to Frank Delagio (IBBR / U Maryland) for the original NMRdraw that has been used for decades and Johnthan Helmus (https://t.co/uylpILLGYi) for the nmrglue framework that powers all the visualization and reads NMR data formats.

[Logan Donaldson @logandonaldson]

Here is a lightweight 1D/2D/3D NMR spectrum viewer for nmrPipe formated datasets. This is especially useful for Mac users who have missed nmrDraw for a long time. https://t.co/VEXeh1QHBo #NMR #NMRchat #BioNMR

[Logan Donaldson @logandonaldson]

3D example with real time phasing in all dimensions

[Logan Donaldson @logandonaldson]

2D HSQC example with real time phasing

[Logan Donaldson @logandonaldson]

1D stack plot example

[Logan Donaldson @logandonaldson]

@DidiKieran Given the versions of JAX and PyTorch used plus references to sm_90, I would estimate that development of this software started around late 2023 to early 2024 on H100 GPUs? I have Proteina working on a Blackwell RTX6000 now -- took a lot of JAX patching.

[Logan Donaldson @logandonaldson]

@Miss_Allison_D @TheFrankDomenic I go across town from York-Durham Line to Jane street and that promotion has been a life saver for me giving me an extra hour of sleep and cutting commuting time in half versus the 401. But the promotion is over for me and the thought of paying $26.55 one way at 3:30 pm is nuts.

[Logan Donaldson @logandonaldson]

@SynBio1 After 26 years as a PI, working at the bench and making proteins gives me the greatest satisfaction

[Logan Donaldson @logandonaldson]

@heyshrutimishra PPP Po

[Logan Donaldson @logandonaldson]

@mverbora In Vaughan, I kept the fence segments and replaced the posts for $200 each x 6. Luckily, I have a good neighbour and we split the $1200.

[Logan Donaldson @logandonaldson]

@rafapinilla92 @pentamorfico Congratulations! A few years ago, I participated in a metabolomics study NADH + others were monitored during shigatoxigenic phage infection.

[Logan Donaldson @logandonaldson]

@Rothmus Twi similar handbags is a scene from the movie “In the Mood for Love” (2000) set in Hong Kong — the main characters realize that their spouses are having an affair.

[Logan Donaldson @logandonaldson]

@MartinPacesa Thank you for the tips and making it so straightforward to install the software considering all the modules that have to work together. Time to fire up that A100 again :)

[Logan Donaldson @logandonaldson]

@nmronline Ask the @LEK_Lab !

[Logan Donaldson @logandonaldson]

@EdFatherOfCats I'm so sorry -- cherish the memories of you and Brave Harpo

[Logan Donaldson @logandonaldson]

@CP24 I received the offer. It’s life changing for me. It’s lasts from April to June. A few years ago, I had the all-u-can-drive for $69 deal and that was even better.

[Logan Donaldson @logandonaldson]

@black_tank_top @_machine_etal @YumizSui Thank you for your efforts !

[Logan Donaldson @logandonaldson]

@drGregBowman @HannesStaerk My concern is with implementation... torch 1.x + cuda 11 that might be due to the openfold framework. Has *anyone* been able to run this software on a typical updated linux platform (like you get on a cloud service) with cuda 12 and torch 2?

[Logan Donaldson @logandonaldson]

Hey @duolingo - can you replace, “There is a kitten in the trash can”? with a different practice sentence? Thank you.