Matthias Fahrner

Postdoctoral researcher @Schilling_lab, performing clinical mass spectrometry #Pathology #Cancer #Proteomics #UseGalaxy

[Cancer Core Europe (CCE) @CancerCoreEU]

Excited for #CCESummSchool24 in Translational Cancer Research? Hear from @mfahrner313 on his experience & takeaways.

🚀 Apr 2024 applications open soon, stay tuned!

ℹ️ https://t.co/Jp9VHhorEn

@VHIO @karolinskainst @NKI_nl @DKFZ @NCT_HD @CRUKCamCentre @IstTumori

[The GalaxyP Project @usegalaxyp]

'A #UseGalaxy of Informatics Resources for MS-based #Proteomics' is now published in @tandfonline's Expert Review of Proteomics. https://t.co/ojqTvh7xWn
https://t.co/32UlPTSFsx #proteogenomics #metaproteomics #Multiomics #MSImaging

[Biozentrum, University of Basel @biozentrum]

Assistant/Associate Professor in Molecular, Cellular or Systems Biology

https://t.co/QyeZbYGkdg

@biozentrum @UniBasel_en
#Biozentrum #Basel #research #science #professorship

[Alejandro Brenes @AJ_Brenes]

Position with my former PhD advisor, Angus Lamond at @GREDundee @UoDLifeSciences using #proteomics and machine learning to look at alternative splicing, cool 1 year project with potential to be extended. More details on the screenshot below but please do circulate around.

[Proteomes MDPI @Proteomes_MDPI]

Article by @mfahrner313 's team:
"A Systematic Evaluation of Semispecific #Peptide Search Parameter Enables Identification of Previously Undescribed N-Terminal #Peptides and Conserved Proteolytic Processing in #Cancer #Cell Lines" 🔗https://t.co/ZId8dV6wMA via @Proteomes_MDPI

[Melanie C. Föll @MCFoell]

Learn about spatial #metabolomics by #MSImaging at the Introduction to metabolomics analysis training. More information & registration: https://t.co/fDaWy2LWTI

[FFF Freiburg @F4F_Freiburg]

Freiburg, du bist toll! Über 9.000 Menschen waren dabei, um für eine konsequente Klimapolitik und soziale Entlastung zu demonstrieren! 📢🔥

#PeopleNotProfit #Klimastreik #FridaysForFuture

[Bérénice Batut @bebatut]

Why is @galaxyproject a powerful framework for #teaching and #training?
A thread 🧵 (1)

[Melanie C. Föll @MCFoell]

Great collaborative effort towards more #Proteomics software in #UseGalaxy. Thank you so much @warscheidlab @Schilling_Lab @usegalaxyp @mfahrner313 @pinterniko @bjoerngruening.

[Melanie C. Föll @MCFoell]

@bjoerngruening @warscheidlab @Schilling_Lab @pinterniko @mfahrner313 @usegalaxyp @UniFreiburg @maxquant Upcoming workshops with MaxQuant & MSstats for proteomics analysis in Galaxy:
- March 22: Free Global Galaxy online course: https://t.co/LBPhCNUOzb
- August 22: As part of the Galaxy-P workshop at IMSC 2022

[Björn Grüning @bjoerngruening]

Great #teamwork by @warscheidlab @Schilling_Lab
@MCFoell @pinterniko @mfahrner313 @usegalaxyp @UniFreiburg

Thanks a lot, everyone! @maxquant available in #UseGalaxy here: https://t.co/hqj862ULiM

[Melanie C. Föll @MCFoell]

First #MSImaging case study from @UniFreiburg 🥳 Fully transparent analysis performed on a single platform #UseGalaxy, histories and workflows are published, as well as the raw data via @pride_ebi. Thanks @olgavitek and team for their contributions!

[Melanie C. Föll @MCFoell]

Training Materials can be found in the #UseGalaxy @gxytraining #proteomics collection: https://t.co/MuDLE5dBDH More information on MaxQuant and MSstats in DIA Galaxy worfklows by @mfahrner313 available here: https://t.co/Oalfh8LtVf

[Galaxy Project @galaxyproject]

We are pleased to announce that the GCC2021 @thePeerJ Best Poster/Demo Award went to Maren Stillger and team for their presentation on "Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy” https://t.co/t2tqiykUTr #UseGalaxy

[Matthias Fahrner @mfahrner313]

I'm happy that our work on the identification of previously undescribed semispecific peptides has been published!
#proteomics #Bioinformatics @Schilling_Lab

We employ a publicly available workflow in the #UseGalaxy framework to reanalyze published data.

https://t.co/pwQzhic7zo

[Melanie C. Föll @MCFoell]

I am very excited to present together with @mfahrner313 an overview about the many options #UseGalaxy offers for #proteomics analyses from DDA to DIA and #MSImaging. We'll also cover proteogenomics and metaproteomics pipelines developed by @usegalaxyp. #TeamMassSpec

[ELIXIR Belgium @ELIXIRnodeBE]

Did you know Galaxy now allows you to do DDA & DIA proteomics data analysis? Learn everything about it during our course on 3 & 4 December! More info & registration on https://t.co/7KMy0SEeEj. With special thanks to @mfahrner313 @MCFoell @Schilling_Lab @vibbioinfocore