Open data linkage, visualization and sharing for genomic epidemiology and phylogeography @thecgps @bdi_oxford Funded by Wellcome & Li Ka Shing foundation.
Since COVID-19 hit the UK in March, we've been at the forefront of genomic sequencing – sequencing over 18,000 samples.
Our new photo essay explores the collective effort of the Quadram, @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk: https://t.co/nJUrKVhvDx
RoomRater Microreact edition: cheery flowers, newly minted genomic epi', but cat has been staring at @mymicroreact trees for too long - 10/10 @KCMellor
We've also made a @MyMicroreact project to take a look at what we know about #SARSCoV2 in the #Philippines so far (using all the shared GISAID and NCBI genomes). Take a look! https://t.co/snbabcdJRi
We’re pleased to announce a donation of £100 million from @INEOS to establish the new INEOS Oxford Institute, helping us to combat one of the world’s greatest healthcare challenges - antimicrobial resistance >> https://t.co/GRX9Aejuyc
@gringene_bio@bioinformAnt@TheCGPS@CovidGenomicsUK@MRCClimb @sciolato Also, here's a thread showing a quite prominent (and continually inspiring) fellow countryperson viewing SARS-CoV-2 data within NZ via Microreact (via another friend @Joepdl ) https://t.co/EnsHCeaEwn
Prime Minister @jacindaardern made a surprise visit to ESR today to say thanks for the hard work and long hours our staff have put in during the COVID-19 pandemic. She was fascinated by how we are helping to understand the latest outbreak through genome sequencing
Thank you for flagging @sciolato We had the team work tirelessly to sort out and here you go. This project also shows another new(ish) feature of being able to use emoji's as icons, and also linking directly to a Google Sheet. #OneLessKiwiproblem Aroha!
https://t.co/NsGm0Iljpc
Prime Minister @jacindaardern made a surprise visit to ESR today to say thanks for the hard work and long hours our staff have put in during the COVID-19 pandemic. She was fascinated by how we are helping to understand the latest outbreak through genome sequencing
@typeMAT12 @silargi Hi @typeMAT12 - absolutely, Microreact does not need trees for you to be able to look at your data - simply drag a csv (or link to a gsheet) - if lat/lons present you'll get a map - shout if you need any additional stuff for lineage display as the charting is an easter egg atm!
Excited to share 1st preprint from our lab! Genomic analysis of clinical Campylobacter strains from Chile led by Veronica Bravo https://t.co/02oONVzpKF Great collaboration with @narjol1 and Lorena Porte, Thomas Weitzel @Clinicaalemana! @MyMicroreact link https://t.co/DoSjP88DJB
Thank you for flagging @sciolato We had the team work tirelessly to sort out and here you go. This project also shows another new(ish) feature of being able to use emoji's as icons, and also linking directly to a Google Sheet. #OneLessKiwiproblem Aroha!
https://t.co/NsGm0Iljpc
NEW TREE VIEWER UPDATE: All projects now feature a vastly enhanced tree viewer (phylocanvas) that scales to 100s of thousands of leaves - here's a data linked tree of global SARS-CoV-2 genomes via the @CovidGenomicsUK Check out your projects. https://t.co/E13jkSmvuZ
UPDATE: 22,218 SARS-CoV-2 @CovidGenomicsUK seen here within the global tree (n=33,904). Much improved tree viewer in @MyMicroreact along with global (pangolin) lineage distribution. Mammoth effort from across the UK sequencing and analysis centres https://t.co/ORzTDWhELU
SeqCOVID Spain @MyMicroreact podemos ver la distribución de muestras y linajes en el tiempo y el espacio de los genomas generados en el consorcio.
https://t.co/NSmGkA7j4A
https://t.co/N8pzWJmINZ
Brought to You by Your Friendly Neighborhood @GaloGoig with help from @leosanbu