Heath Patterson

Director of Spatial Biology Bioinformatics at @AspectAnalytics

[Theodore Alexandrov @thalexandrov]

I’m happy to present our new preprint by @VSaharuka et al which helps answer the key question in #spatial #metabolomics and #imaging #mass #spectrometry: which molecules are detectable and which protocols shall one use? https://t.co/WtA5htRwTM 🧵 1/n

[Daily Loud @DailyLoud]

Mercedes showing off their 360 turn feature in the new electric G Wagon

[Heath Patterson @NHeathPatterson]

Really great work I had a chance to participate in with @AllisonEsselman. We did spatially targeted MALDI imaging of hundreds of discrete glomeruli. We found them all with automated segmentation of label-free autofluorescence microscopy.

[Jeff Spraggins @JeffSpraggins]

So proud of the amazing work and wonderful presentation by Ally Esselman (grad student @VanderbiltChem) at #ASMS2023. Thanks to our collaborators and friends in the @vandeplaslab

[Spraggins Lab @SpragginsLab]

Two incredible oral presentations coming from the Spraggins lab at #ASMS2023

@AllisonEsselman will unravel the molecular distribution of glomeruli using microscopy-directed high spatial resolution IMS, while jackie dives deep into the molecular distribution of S. aureus abscess

[Aspect Analytics @AspectAnalytics]

This summer, Aspect Analytics will be attending #ASMS2023, Spatial Biology US #OmicsSeries23, #internationalspatialbiologycongress, and #ANZSMS.

We might look like this after that schedule, but we’re always up to discuss #spatialomics, #dataanalysis, and #ai4smox.

[Heath Patterson @NHeathPatterson]

@PrenticeLabUF @colin_diao Good work, congrats @colin_diao and to Prof. Prentice too!

[Spraggins Lab @SpragginsLab]

Happy (belated) New Year! Let's get the year started off right with some cool collaborative informatics work associated with the @_hubmap project!

https://t.co/TdzmUABZvy

[Lee Cantrell @Lee_S_Cantrell]

Excited to share my most recent manuscript on lens aging! We used DIA MS Proteomics to identify key age-related protein changes, identifying a proteome remodeling event concurrent to enhanced risk of cataract formation at approximately 50 years. https://t.co/nNV8gZuHGh

[Human BioMolecular Atlas Program (HuBMAP) @_hubmap]

Want to have a vision of how the cells in your cornea look? Look no further than #_hubmap researcher Dr. David Anderson's Image of the Week, a #MALDI #IMS view, which is downright visionary! #hubmapimage @vanderbiltU @spragginslab #scienceimages

[Heath Patterson @NHeathPatterson]

@seejbrown When I saw your post yesterday I almost wrote something like "get a microscopy image! Interpreting chemical images from IMS with morphology from microscopy is a big win (almost a necessity IMO)" Looks like you got on the right path quickly! Good luck!

[Aspect Analytics @AspectAnalytics]

We are incredibly pleased to welcome Reza Ranjbar Choubeh, Maria José Mantas and Heath Patterson to the Aspect Analytics team! 🎉 #AI4MSI #spatialbiology #spatialomics #growth #bioinformatics

[Heath Patterson @NHeathPatterson]

@EMBLHeidelberg @alexandrovteam @thalexandrov @BioCPH @ERC_Research @embl I'm optimistic about this technology. The little technical details many aren't aware of are done right. Best of luck.

[Van de Plas Lab @vandeplaslab]

Thrilled about imaging? We are hiring a #PhDposition and #postdocposition in signal processing & machine learning at @tudelft.Join us in building 3-D molecular atlases to decipher cellular diversity in human organs.Please share.https://t.co/aRzBqWogLY https://t.co/0NGquxSeEl #PhD

[Heath Patterson @NHeathPatterson]

Come see our #ASMS2022 posters to learn about our microscopy data integration tools and our cutting edge sample preparation for high-res MALDI IMS. If you want deep dive on our multimodal MALDI IMS: our approach and tools will be taught at IMSS in Baltimore. @IMSSNews

[Spraggins Lab @SpragginsLab]

Final day #ASMS2022! Let's end it with a bang! We've got two excellent posters by Heath (@NHeathPatterson) and Martin, as well as a talk by collaborator and friend of the lab Lukasz (@lgmigas). Make sure you check it all out! Hope to see you there!

[Van de Plas Lab @vandeplaslab]

Come check out the work from Van de Plas lab members and our collaborators at #ASMS2022 #TeamMassSpec #ImagingMS @lgmigas @RafVandePlas

[elise @ion_resonance]

ASMS time! I'd be so grateful for you to listen to my talk on Tuesday am in room 103 in the session spatially resolved omics! @SpragginsLab #ASMS2022 #massspec #ims #imagingms #lipidomics #spatialomics #pasef #pasefms #timstof #morethanjustaprettypicture #spragginslab

[Heath Patterson @NHeathPatterson]

Not pictured: all the bullseyes and bullseyes' arrows split in two by other arrows.

[Spraggins Lab @SpragginsLab]

How does our team de-stress on a Friday? How about some 🏹 at the @VanderbiltCDB retreat. Everyone brought out their inner Katniss/Hawkeye.

[trevor manz @trevmanz]

Viv is published @naturemethods! Our #bioimaging library enables the creation of web-based vis and analysis tools to complement desktop software also built upon open standard #OMETIFF & #OMENGFF from @openmicroscopy. https://t.co/5HbuKhasnM

https://t.co/GXIw1TV6JG

[Heath Patterson @NHeathPatterson]

I've pre-recorded the workshop and you can find it here: https://t.co/4wg5Eu9G1V For the 75 minutes i'm sorry 😅 2x may work.

[Heath Patterson @NHeathPatterson]

The output images are pyramidal OME-TIFF and work well in @QuPath @openmicroscopy and Vitessce. Vitessce demo: https://t.co/rTwjv3Xbga Besides images, wsireg can "attach" point-sets and additional images to those registered and seamlessly transform them.