openmicroscopy

The Open #Microscopy Environment - #opensource #image tools. Project news, #imaging, #bigdata, #openscience stories & more. [OME logo TM Glencoe Software, Inc.]

[openmicroscopy @openmicroscopy]

With the Twitter APIs soon to be behind a paywall, it is likely to get more difficult to migrate your followers and followees elsewhere. In preparation, please take the time to follow:

@[email protected]

[openmicroscopy @openmicroscopy]

The OMERO installation workshop at #foundingGIDE event at @riken_en in Kobe was followed by the "Imaging workflows in OMERO" workshop. The participants had the satisfaction of installing OMERO on a VM. A lively discussion ensued on Monday 4th November here in Kobe.

[openmicroscopy @openmicroscopy]

Join the 3rd Get Your Brain Together Hackathon to advance #OMEZarr spatial transformations!

Fri., July 26th - Sun., July 28th, 2024

Registration free!

Hybrid event at UNC-Chapel Hill via Google Meet, https://t.co/wzaxagr6db, & https://t.co/iji3vwWXxB

https://t.co/JZEGIbNhOa

[openmicroscopy @openmicroscopy]

Getting ready for another workshop... This time we are at The Smithsonian Tropical Research Institute in Panama @stri_panama. Looking at very exciting prehistoric plants. Thanks for having us

[openmicroscopy @openmicroscopy]

OME Team presented an #IDR lightning talk and poster, plus two #OMERO workshops, at @EuLiMI1 2024 meeting in Liverpool. Thanks all for helpful questions and great feedback. Great to see #OMERO in many presentations on FacilityManager Day.#openimagedata,@IDRnews #OMENGFF,#OMEZarr

[openmicroscopy @openmicroscopy]

Great meeting #OME2024. Very helpful discussions, progress in #OMENGFF, #OMEZarr, new workflows in @bioformats, spreading of #OMERO worldwide continues! See you next year at OME2025! Stay tuned for details and location! #openimagedata, @IDRnews

[openmicroscopy @openmicroscopy]

@GIDEproject @bioformats @IDRnews Unfortunately no. It's in person only.

[openmicroscopy @openmicroscopy]

Interested in #OMENGFF, #OMEZarr, @bioformats, #OMERO, #openimagedata, @IDRnews, bioimage data repos, data sharing, #FAIR? Come to Dundee May 29-31 for #OME2024. https://t.co/eQ6H1ikLM6 for info and registration.

[IDR News @IDRnews]

New 13 TB study publicly available in IDR!  The study has 14 organisms, 13 of which are new to IDR.

Released ahead of its publication - Estimating essential phenotypic and molecular traits from integrative biodiversity data from Peters at al.
https://t.co/ogrzdwwOvh

[openmicroscopy @openmicroscopy]

OMERO.server 5.6.11 and OMERO.insight 5.8.4 are now out! See https://t.co/O5CjslAYjs for more details

[Will Moore @will_j_moore]

Reminder that registration is open for the @openmicroscopy 2024 community meeting in Dundee 29th - 31st May https://t.co/v9xyc1i0Ua

[openmicroscopy @openmicroscopy]

The registration for the OME 2024 Community Meeting is live now on https://t.co/JLy0FazsGA. Please register by 21st of May. See you soon in Dundee!

[openmicroscopy @openmicroscopy]

Save the date and join us in-person in Dundee for 29-31st of May 2024. Looking forward to see you here ! Details and programme to come soon. OME Team

[Josh Moore @notjustmoore]

Looking for a way to share your spatial omics datasets?

If you haven't checked out the #SpatialData article (link) or code (quoted tweetorial), now may be the time.

#OMENGFF images🔬integrated with #AnnData tables 📑 all wrapped into #Zarr packages. 🥰

https://t.co/7Vqlnt1xLB

[Luca Marconato @LucaMarconato2]

1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository: https://t.co/kq724ANPsf

[Fabian Theis @fabian_theis]

Excited that SpatialData is out @naturemethods! With @OliverStegle & @notjustmoore labs, we introduce & implement a dataframework & fileformat for multimodal spatial omics, based on the @openmicroscopy standard. Read at
https://t.co/aCF4Bh8dKp & try here https://t.co/UlamEjkCZV.

[openmicroscopy @openmicroscopy]

Second day at @UGMYogyakarta OMERO workshop. Further exploration of large pathology images, connection of OMERO and @QuPath , scripts and @FijiSc OMERO plugin. We continued with deep learning app CellPose connected to OMERO via Python API

[openmicroscopy @openmicroscopy]

Strong start into the first day of the OMERO workshop at @UGMYogyakarta. The OME Team went through basics of OMERO, OMERO.figure and @QuPath extension of OMERO.

[openmicroscopy @openmicroscopy]

Focused participants looking at Pathology images stored at @dundeeuni and View&Analyze from @UGMYogyakarta. Exciting!

[openmicroscopy @openmicroscopy]

First OMERO workshop in Indonesia🙏. This is the beginning of an exciting collaboration between @dundeeuni and @ugmyogyakarta. Thanks to Dr Ery and team for making it happen.