Patrick Stumpf

Curious about stem cells in health and disease, machine learning and systems biology.

[NHR4CES @NHR4CES]

The first NHR4CES Community Workshop is scheduled for June 20 and 21.  

Have a look at our program and visit our website for information about the registration and zoom links: https://t.co/hD9Jl012oV

#NHR4CES #Community #Workshop #HPC #RWTH #TUDarmstadt

[Lior Pachter @lpachter]

If you work w/ single-cell RNA-seq & are performing RNA velocity analyses, you might find this @GorinGennady et al. preprint w/ Meichen Fang & Tara Chari of interest. It's a deep dive into the method, and navigation of the 67 pages may be aided w/ this🧵1/
https://t.co/6ESXDbt1MC

[Hugh Warden @HughWarden1]

I am very pleased to announce that my package `rhype` has been accepted into CRAN!! It was a nightmare during my master's thesis to not have a specific package for working with hypergraphs in R so I went and made one! Check out more info here: https://t.co/6HKG5UIx40

[Adam MacLean @adamlmaclean]

🙌 THANKS 🙌 to all of the contributors to this special issue, it was a great fun to put together w Qing Nie.

Editorial & Overview 👇

The diverse landscape of modeling in single-cell biology

https://t.co/fM5Q2p0hYV

[Patrick Stumpf @p4sst]

@fid_anto @EHA_Hematology Fantastic news :)) congratulations 🥳

[bioRxiv Cell Biology @biorxiv_cellbio]

Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo https://t.co/W01PCq7YnZ #biorxiv_cellbio

[Marta E Polak @SystImm_Nomad]

Very happy to share our just published online paper on IRF1-IRF4 Toggle-Switch controlling human LC behaviour. @JamesDaviesSci not only identifies the switch, but shows its working at different body sites, fine-tuning immune responses to tissue context. https://t.co/UIbXsuLjBO

[Patrick Stumpf @p4sst]

I could go on about this idea, for example, how the dependence structure of the hypothesis network will look like (i.e. each new idea is naturally rooted in prior ideas), or, as another example, if such a database may one day facilitate artificial reasoning... [12/12]

[Patrick Stumpf @p4sst]

I love this idea (and the paper that started this discussion!). I recently thought about a database of hypotheses where everyone can submit hypotheses and supporting or falsifying evidence. Both hypotheses and evidence are openly reviewed. A 🧵of ideas [1/n]

[Adam MacLean @adamlmaclean]

@roy_wollman I may be over atlases of cells. I'm all in for atlases of models... or ideas.

[Patrick Stumpf @p4sst]

I believe that such a database may accelerate scientific progress by opening up the research process and by making it transparent and reproducible. [11/n]

[Patrick Stumpf @p4sst]

@theosysbio Thanks Michael!