PREGO project

Processes, Organisms, Environments..
as we say, text-mining, data integration and network analysis.
An attempt to elucidate ecosystem functioning.

[ccmri_project @CcmriP]

CCMRI at #mbkceesme2025 (Thessaloniki, Greece). Alexis Loukas and Nefeli Venetsianou would be happy to inform you about recent project developments
(CCMRI: https://t.co/DysgPi3YnO - an @HcmrImbbc project, @ELIDEK_HFRI thank you for making this possible)

[ccmri_project @CcmriP]

Join us at the poster sessions of the BioInnovation Greece 2025 forum (bio3-2025).
Nefeli Venetsianou and Christina Damianou would be happy to inform you about the CCMRI project developments
(https://t.co/DysgPi3YnO, an @HcmrImbbc project, @ELIDEK_HFRI thank you for the funding)

[ccmri_project @CcmriP]

The CCMRI project and its components were presented yesterday at the GSC 2025 workshop (Cambridge, UK) - CCMRI an @HcmrImbbc project, thank you @genomestandards
for the opportunity, @ELIDEK_HFRI for making this happen - presenters: Nefeli Venetsianou, Alexis Loukas (title slide)

[ccmri_project @CcmriP]

Join us today and tomorrow at the poster sessions of the
@ELIXIREurope 2025 All Hands meeting to find out the latest on the CCMRI project (an
@HcmrImbbc project) @ELIDEK_HFRI thank you for funding this trip/project

[ccmri_project @CcmriP]

Dr. Alexios Loukas presenting CCMRI - earlier today - in the Hellenic Bioinformatics 2025 conference. (CCMRI an @HcmrImbbc project, @ELIDEK_HFRI thank you for funding this trip/project) 👏

[ccmri_project @CcmriP]

Nefeli K. Venetsianou presenting her work on the Sample Matcher of CCMRI (an
@ELIDEK_HFRI @HcmrImbbc project) in the #EMBOcompEvo25 Practical Course 👏

[Hellenic Foundation for Research & Innovation-HFRI @ELIDEK_HFRI]

#testimonials
Ευάγγελος Παφίλης, Ερευνητής Β Βιοπληροφορικής & Πληροφορικής Βιοποικιλότητας
ℹ️ Το Έργο υποστηρίχθηκε στο πλαίσιο της 1ης Προκήρυξης ερευνητικών έργων ΕΛΙΔΕΚ για την ενίσχυση Μεταδιδακτορικών Ερευνητών/τριών, στην ΕΠ1: Φυσικές Επιστήμες.
#BrainGain #StrongerGreece

[ccmri_project @CcmriP]

Join us today at the #2024Bio3 poster session to find out the latest on the CCMRI project (an @HcmrImbbc project) @ELIDEK_HFRI thank you for funding this trip/project (CCMRI Team left to right: Christina, Nefeli, Alexis, Vangelis)

[imbbc-hcmr @HcmrImbbc]

Θέση εργασίας - CCMRI corpus curator - επιστημονικός/ή συνεργάτης/ιδα Βιολογίας/ Οικολογίας / Μικροβιολογίας / Περιβαλλοντολογίας (ή συναφούς αντικειμένου) κάτοχος Μεταπτυχιακού τίτλου σπουδών - ΕΛΚΕΘΕ.
Info: [email protected], Δρ. Βαγγέλης Παφίλης
https://t.co/qfww3qoKka

[PREGO project @prego_project]

"From Micro to Macro Defining Crete's Macroecology based on its soil Microbial Interactome"
based on Crete Island Sampling Day 2016 #isd2016 @unonoctium @genomestandards @HcmrImbbc @ELIDEK_HFRI

[MikroBioKosmos _ All microbes, one planet @mikrobiokosmos]

@unonoctium presenting at #10MBK2023

[ccmri_project @CcmriP]

Interested in statistics on microbiome (meta)data in the context of climate change research? A Bioinformatics (MSc) position is now available. Job post (in🇬🇷): https://t.co/gPWYb5hJAS ℹ️✉️ ccmri [at] hcmr [dot] gr, ℹ️ https://t.co/JnVFgHvW3t, https://t.co/vV7ptt2dJp @ELIDEK_HFRI

[PREGO project @prego_project]

🔧🏁...and the PREGO server is back; up and running 🏎️🎉

[PREGO project @prego_project]

🔧Precautionary server shutdown: due to the heat wave ☀️☀️☀️ affecting 🇬🇷/Crete the PREGO server will go offline today (Fri, 14 July 2023) at 15:00 (EEST). The server is expected to be back online around midday on Monday 17 July 2023 🔧

[PREGO project @prego_project]

... the 🔧 maintenance🏎️🏁 finished successfully and ahead⏳of time! The PREGO server is back, up and running! 🎉

[PREGO project @prego_project]

Maintenance 🔧 week coming up: the PREGO server will undergo 🔧 in the coming days. For this reason PREGO will go offline today (Fri, 23 June 2023) at 14:00 (EEST). Downtime is expected to last for a week. Many thanks to https://t.co/cVWf6A5vgM for their support. Stay tuned!

[ccmri_project @CcmriP]

Are you interested in Text Mining, Machine Learning, Microbiome (meta)data, Climate Change? Two positions in Bioinformatics/IT are available. Find out more at: https://t.co/4p7Oz8EB7d (2+ years each, @HFRI /ΕΛΙΔΕΚ funded, Job post in Greek) Contact: ccmri [at] hcmr [dot] gr (1/2)

[PREGO project @prego_project]

@cpavloud @campanarostef The GO Biol. Process term "Methane biosynthetic process from methanol and hydrogen"
is supported. Such a name, though, has not been matched in literature/db records
https://t.co/JauhPcszfj "hydrogenothrophic methanogenesis" could be a nice synonym to add & improve the system 2/2

[PREGO project @prego_project]

@cpavloud @campanarostef In case it is of interest: here is what PREGO reports on Methanothermobacter wolfeii
https://t.co/tF6zlfUMaB
One may click on the "Biological Process" "Molecular Function" tabs to find out more; clicking on a term will show relevant information, e.g. literature text quotes (1/2)

[Horizon Europe 🇪🇺 @HorizonEU]

Are you interested in Greece’s research & innovation sector and its national #research infrastructures?

Find out more about NRIs in #Greece 🇬🇷 and #PolicySupportFacility's recommendations.

[PREGO project @prego_project]

:) Dive in the PDF, Figure 2, for an example of how multiple PREGO-derived process-environment-organism associations can be visualized in a single 3D network

[Georgios Pavlopoulos @g_pavlopoulos]

Arena3D (https://t.co/ufq9VszV08) for interactive visualization of 3D multilayered networks now supports:
->new themes and color schemes
->directed graphs
->multiple edges for different information channels
->clustering
->VR
->Integration with Cytoscape
https://t.co/vPqdAsIENn