RAP-DB

The Rice Annotation Project Database (RAP-DB) provides information about the rice reference genome and its annotation.

[RAP-DB @rapdbjp]

Our new RAP-DB paper has been published in Rice (https://t.co/PYBGcWTpyZ).
https://t.co/FNWpLKJ5sP

[RAP-DB @rapdbjp]

@plantascientist Thanks for your comment! We don’t currently have a mapping table between RAP/MSU IDs and UniProt IDs, but we agree that it would be very useful since UniProt provides a lot of valuable information. We’ll consider whether we can offer this kind of data in the future.

[RAP-DB @rapdbjp]

@finch_shenq Thanks so much for your interest! At the moment, we don't have plans to expand the comparative genomics data to a broader range of non-model plants.

[RAP-DB @rapdbjp]

Comparative genomics data for eight model plant/crop species are now available (CompGenomes -> 8 model species). https://t.co/7s4NUp510Y

[RAP-DB @rapdbjp]

いつもRAP-DBをご利用いただきありがとうございます。先日のRAP-DBのリニューアルに伴い、URLが変更になっています。
https://t.co/t9N4JhGVU0
現在システムトラブルにより、旧URLからのリダイレクト機能が正常に動作しておりません。お手数ですが、新URLのブックマーク登録をお願いいたします。

[RAP-DB @rapdbjp]

Following the recent renewal of RAP-DB, the URL has been changed to: https://t.co/t9N4JhGVU0

Automatic redirection from the old URL is currently unavailable due to a system issue. We apologize for the inconvenience and ask you to update your bookmarks.

[RAP-DB @rapdbjp]

We have implemented SequenceServer as a new BLAST search interface. https://t.co/AAiKD7RfZi
New PLACE, a database of plant cis-acting regulatory DNA elements, is now available. https://t.co/gNIYIdrFTy

[RAP-DB @rapdbjp]

Genomes, gene annotations, and comparative genomics data for three rice cultivars (Koshihikari, Takanari, and Hokuriku 193) are now available (CompGenomes -> 4 cultivars). https://t.co/58aNS8sfnH

[RAP-DB @rapdbjp]

Three new TASUKE+ are now available: Public rice genome data (1,358 varieties) https://t.co/x2z27CFk23 NARO Open Rice Collection (623 varieties) https://t.co/gDyL04My4P and Rice Allele Collection (230 varieties) https://t.co/BVQIuVqU9f.

[RAP-DB @rapdbjp]

The new RAP-DB website has been launched!
Check out our updated logo, designed by graphic designer Yoko Ito.
Visit us at our new URL: https://t.co/t9N4JhGVU0

[RAP-DB @rapdbjp]

New RAP-DB manuscript is now on bioRxiv. We report literature-based curation of gene models and functions, AI-assisted literature screening, integrated transcriptome & genome-wide variant resources, and curated agronomic genes and functional alleles. https://t.co/03xKMxErS5

[RAP-DB @rapdbjp]

メンテナンスを終了し、ただいまサービスを再開致しました。ご協力ありがとうございました。
https://t.co/5sIsbrOoOB

[RAP-DB @rapdbjp]

サーバメンテナンスのため、以下の日程でRAP-DBは停止します。 ご不便をおかけしますが、ご協力をよろしくお願いいたします。
2025年11月5日（水）12:00 - 11月6日（木）18:00
https://t.co/rxA31xKYKG

[RAP-DB @rapdbjp]

We have finished the maintenance and resumed the service now. Thank you for your cooperation.
https://t.co/9Sjj6jO5g9

[RAP-DB @rapdbjp]

RAP-DB will be unavailable from November 5, 2025 at 12:00 to November 6, 2025 at 18:00 (JST) for maintenance.We are sorry for the inconvenience.
https://t.co/rxA31xKYKG

[RAP-DB @rapdbjp]

サーバメンテナンスのため、以下の日程でRAP-DBは停止します。 ご不便をおかけしますが、��協力をよろしくお願いいたします。
2025年11月5日（水）12:00 - 11月6日（木）18:00
https://t.co/rxA31xKYKG

[RAP-DB @rapdbjp]

RAP-DB will be unavailable from November 5, 2025 at 12:00 to November 6, 2025 at 18:00 (JST) for maintenance.We are sorry for the inconvenience.
https://t.co/rxA31xKYKG

[RAP-DB @rapdbjp]

Annotation of 725 transcripts have been updated (2025-03-19) by literature-based manual curation. Gene structure of 258 transcripts were corrected, and 41 loci and 59 splicing variants were newly added. https://t.co/rAmVo7DBga

[RAP-DB @rapdbjp]

メンテナンスを終了し、ただいまサービスを再開致しました。ご協力ありがとうございました。
https://t.co/VO5VB00rd2

[RAP-DB @rapdbjp]

RAPDBサーバのメンテナンスを開始しました。サービスは3月19日（水）17:00に再開予定です。ご不便をおかけしますがよろしくお願い致します。

[RAP-DB @rapdbjp]

We have finished the maintenance and resumed the service now. Thank you for your cooperation.
https://t.co/H4grFAIYJo

[RAP-DB @rapdbjp]

Maintenance of RAP-DB has started. The service will be resumed at 17:00 on Mar 19, 2025 (JST). We apologize for any inconvenience.

[RAP-DB @rapdbjp]

RAPDBサーバのメンテナンスを開始しました。サービスは3月19日（水）17:00に再開予定です。ご不便をおかけしますがよろしくお願い致します。

[RAP-DB @rapdbjp]

Maintenance of RAP-DB has started. The service will be resumed at 17:00 on Mar 19, 2025 (JST). We apologize for any inconvenience.