SaskiaO

Molecular marine biology

[SaskiaO @SaskiaO13]

Last summer I had the pleasure to host a talk and exposition by Jonat Deelsta about his project "Funeral home: The North Sea". Could our traditional funerals be replaced by an underwater alternative while providing a substrate for marine organisms?
https://t.co/JrFCFZ7BRB

[SaskiaO @SaskiaO13]

@IdrissaDieng18 @ReindertN @nanopore @WUR @volkskrant Hi! You can download it from the Github page in the right hand column under "releases" (latest version is 1.3.1). Alternatively you could also clone the Github repository or download it as zip file, click the green button that says “Code”, and use the included install script.

[Reindert Nijland @ReindertN]

The use of @nanopore sequencing in our MSc-course @WUR on Advanced Molecular Ecology got great press coverage in @volkskrant: (Dutch only) Revolutie in de biologie: DNA analyseren in drie minuten https://t.co/5JxTbvfoGt

[Reindert Nijland @ReindertN]

We preprinted our manuscript on @nanopore #eDNA #metabarcoding. Including a universal primerset for a 2kb region of the 12s-16s rRNA genes of fish mitochondria, and the Decona processing pipeline. Co-first authored by @KDoorenspleet @Lara_Jnsn @SaskiaO13

https://t.co/XaBddJ5NSU

[Reindert Nijland @ReindertN]

Last week the whole team of "molecular maniacs" at Marine Animal Ecology @WUR worked on optimising @nanopore mitogenome sequencing and assembly. Read until worked amazing, and we did assemble 3 full mitogenomes! Seeing the first circular assembly being generated was amazing!

[Atze de Vrieze @atzedevrieze]

Zaal blij, programmeurs met een grijns van oor tot oor. Het pand gonst, van Bach tot Belgenpop tot straks nog even Pop-O-Matic

[Reindert Nijland @ReindertN]

We are hiring! We are looking for a technician to join our Wageningen Marine Molecular Ecology team. #eDNA, #metabarcoding, #WGS, etc. Including a lot of @nanopore sequencing on #MinION and #PromethION https://t.co/SRcCHh2XoD please RT!

[SaskiaO @SaskiaO13]

@PieterAsselman Hallo Pieter, helaas geeft rename bij sommige mensen vaker issues en is er niet zo veel dat ik er aan kan doen. Ik heb inmiddels een nieuwe versie van Decona, zonder deze rename command. Die moet ik alleen nog packagen en online zetten. Dus hopelijk binnenkort opgelost!

[Elin Videvall @ElinVidevall]

Bioinformatic pipelines

[Reindert Nijland @ReindertN]

Sequencing on a bike, revisited. I just sequenced shark DNA using a R10.3 flowcell in the @nanopore #Mk1C, while biking between the lab and home. It keeps blowing my mind this is possible! #realrealtime #anythinganyoneanywhere

[WUR Marine @WURmarine]

Stel je voor; je neemt een liter zeewater, en aan de hand van deze ene liter kun je aflezen welke #vissen er op die plek rondzwemmen. Het klinkt een beetje als een aflevering van een futuristische serie, maar het kan met #eDNA-sequencing! Lees hoe 👉 https://t.co/ZqJe4BQ7Ng

[Christopher Mah, @echinoblog.bsky.social @echinoblog]

A veliger for #MolluskMonday #MolluscMonday

[SaskiaO @SaskiaO13]

Apparently my university does not give me access to this paper.. Does anyone else?
Frith, D. W. Animals associated with sponges at North Hayling, Hampshire. Zoological Journal of the Linnean Society 58, 353-362. https://t.co/RlcbTUgbta #icanhazpdf

[SaskiaO @SaskiaO13]

@twcuddleston Pretending to fall asleep while I drag him from the keyboard @GibbsKuguru

[Reindert Nijland @ReindertN]

I sequence (in) the sea! Interested? Join my talk in the #NanoporeConf auditorium, today at 18.20 CET / 12:20 EST @nanopore @NanoporeConf
https://t.co/FX7w4KOE3u

[Oxford Nanopore Events @NanoporeConf]

Congratulations to our spotlight winner, @Kdoorenspleet! Don't forget you can still watch @hiruna72 & @Quinovines's talks in the Mini Theatre! #nanoporeconf

[Oxford Nanopore Events @NanoporeConf]

KD: Check out poster #23 for more on the Decona pipeline! #nanoporeconf

[SaskiaO @SaskiaO13]

The Nanopore Community Meeting starts today (online, for free)! The WUR Marine Animal Ecology group is well represented with talks from @ReindertN and @KDoorenspleet and I have a poster on the virtual poster wall! Be sure to check them out when you're there. #nanoporeconf

[Oxford Nanopore @nanopore]

The first ever NCM online will open its digital doors at 9:30am (EST), with the Sample Extraction Masterclass kicking off at 10 am!

There's plenty of on-demand content inside the virtual venue — be sure to log on and have a look around! https://t.co/lv0BTIurFo #nanoporeconf

[Oxford Nanopore Events @NanoporeConf]

@ReindertN will join us at #nanoporeconf this year to discuss in-field environmental DNA analysis to monitor the restoration of the North Sea ecosystem and novel autonomous eDNA sampling, and analysis, allowing for non-invasive monitoring.

Register: https://t.co/Ad3nihBtNy

[Gibbs Kuguru @GibbsKuguru]

NEW ARTICLE: One ‘Pore To Rule Them All
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There’s a #new #DNA #sequencer on the block, allowing us to #dive deeper into the #genome of #sharks and #shark #conservation
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https://t.co/lOlSWV73WZ
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@nanopore
@WUR
@sharkproject
@KihaaMaldives
@OceanDimensions