TimotheRouze

Phd student at Pasteur, working on data structure for sequencing data analysis

[Zamin Iqbal @ZaminIqbal]

I'm going to be advertising a PhD studentship (open to international students) working on long read pangenome / assembly algorithms in bacteria. Would suit someone with maths/compsci background. Aptitude and interest more important than experience. Advert to follow. Pls RT!

[Bonsai Bioinformatics @Bonsai_Bioinfo]

Congratulations Dr. Marchand 💐very well done. The whole team wishes you all the best.

[Bonsai Bioinformatics @Bonsai_Bioinfo]

Lilian Marchand, student in Bonsai, will defend his PhD this afternoon, on methods for precise gene-level RNA isoform reconstruction with long reads (Méthodes pour la reconstruction du répertoire des transcrits d’un gène à partir de données RNA-seq de 3ème génération)

[Chloé Baudin @ChloeBaudin_]

Today I presented my first poster on top down proteomics sample preparation at #smap2024.
Still some work to do but proud of the work accomplished :)

[Gro-Tsen @gro_tsen]

I think non-French and non-French-speaking readers should be told about how utterly insane things are now in and around Paris because of the Olympics are. The opening ceremony is one week away and they've already barred any access to the Seine! 🧵⤵️ •1/19

[Giulio Ermanno Pibiri @giulio_pibiri]

On the day of my birthday, this new pre-print came out: https://t.co/F8ElrtdKgT - the extended version of the RECOMB '24 paper about compressed indexes for the colored De Bruijn graph. CC: @AlessioCampa_, @jasonnfan, @nomad421. 1/10

[TimotheRouze @TimotheRouze]

@giulio_pibiri Here you go! https://t.co/6w9MfzjSIz
You can download the detailed program as an excel sheet there.

[🏴‍☠️ MC Pablo ∴ #SyndiquezVous 🇵🇸 @p4bl0]

#ESR Motion de la section 27 (informatique) du CNU @CNU_Section27 :

Les enseignant·es-chercheur·es en informatique appellent à faire barrage partout et en toute circonstance à l'extrême-droite.

[Bonsai Bioinformatics @Bonsai_Bioinfo]

@TimotheRouze @IgorMartayan Caleb Smith and Léa Vandamme present their works at DSB this year (two preprints and one incoming)

[Zamin Iqbal @ZaminIqbal]

First step in a community project to provide a uniformly assembled, annotated and searchable set of bacterial genomes, our preprint on our initial release of 1.9 million genome assemblies+taxonomic estimates. (figure compares with previous 661k dataset)
https://t.co/RLQiUBZJNk

[Jarno N. Alanko @[email protected] & Bluesky @jnalanko]

Check out our new paper on frequency-bounded minimizers, or "finimizers", as we call them! Thread. #Bioinformatics

[Publishing with Integrity @fake_journals]

.
When the integrity of the scientific archive is compromised, this is the result.

"Papers used by judge to justify abortion pill suspension retracted" from @RetractionWatch, talking about a @Sage_Publishing journal.

... and this is the problem when the integrity of the scientific archive is compromised.
Those that rely on it, make decisions based on its validity. If this cannot be done then decisions can be made which can have dire consequences for the 'end user'

https://t.co/2gIPVFuODZ"

[TimotheRouze @TimotheRouze]

@pashadag @giulio_pibiri @BQPMalfoy That's it!

[TimotheRouze @TimotheRouze]

I'm looking for pangenome core k-mer counting tools.
Anybody here know some ?

[TimotheRouze @TimotheRouze]

@ZaminIqbal @CamilleMrcht @NystromSpencer @IgorMartayan I will have a look at this! Thx!

[TimotheRouze @TimotheRouze]

@giulio_pibiri @GuillaumOleSan @pashadag Thx for your inputs! Bifrost and ggcat where among my go to!

[TimotheRouze @TimotheRouze]

@CamilleMrcht @NystromSpencer Every possibility we found so far are clearly overkill 😅

[SFBI @SfbiFr]

#jobim2024, ce sera du 25 au 28 juin 2024 à @Toulouse❗️
📝 les dates importantes :
👉appel à mini-symposiums : début décembre - mi-janvier 2024
👉appel à contributions orales : début 2024 - mars 2024
👉appel à posters : mars/avril 2024 - avril/mai 2024
⬇️⬇️⬇️ plus d'infos ⬇️⬇️⬇️