tskit-dev

Updates from the tree sequence ecosystem.

[tskit-dev @tskit_dev]

🎉 tskit 0.6.0 is released! 🎉
Thanks to our wonderful contributors, this is a bumper release. Read all about it at:
https://t.co/NaTr9gHSMV

[Dr Yan Wong @DrYanWong]

How to load 1.27 million Covid genomes, and their complex ancestry, into your laptop in ~1 second. If you're into #bioinformatics, help us improve our new software: https://t.co/GvbTdB5WwE

[tskit-dev @tskit_dev]

🥳 tskit Python 0.5.5 and C 1.1.2 are released 🥳
This has the excellent random tree seeking by Kevin Thornton which makes hopping to a specific tree much faster.
See the full release notes at https://t.co/GWt1CHIOYx

[Andrew Kern @pastramimachine]

Tomorrow at 1PM EST I'll be leading an "Intro to stdpopsim" workshop as part of #ProbGen2023. Zoom info attached if ppl would like to join remotely. Join us to learn about this incredible, community resource for simulation

[tskit-dev @tskit_dev]

tskit can make fancy 3D plots for your talks!

[Dr Yan Wong @DrYanWong]

@tskit_dev 3D tree plots are now easy! https://t.co/F5wMusqcZp

[tskit-dev @tskit_dev]

And finally Python3.11 support means that you can use tskit with the massive performance improvements from Python3.11! (@benjeffery)

[tskit-dev @tskit_dev]

🥳 tskit 0.5.4🥳
This first release of the year brings some useful features and support for Python 3.11. Thank you to our lovely community of contributors! https://t.co/EbIaXSfirp 🧵👇

[tskit-dev @tskit_dev]

"simplify" now has a "update_sample_flags" option for when you want to manage your own sample nodes. (@jeromekelleher)

[tskit-dev @tskit_dev]

We've got a new marketing expert for the tskit ecosystem:

[tskit-dev @tskit_dev]

"The ARG revolution in population and statistical genetics" @WilderWohns talk at @OfficialSMBE is now available at:
https://t.co/O4DznOUobp

[M Gurke @MarGurke]

Here is @tskit_dev trying to cheer up their readers. Love it!

[tskit-dev @tskit_dev]

🎉tsinfer 0.3.0🎉
This release brings a set of fixes and features, including a substantial improvement in date estimation when tsdate is used after tsinfer 0.3.0.
Read all about it here:
https://t.co/LtpR43VCcw

[tskit-dev @tskit_dev]

🥳tskit 0.5.3 is released!🥳
Available now on PyPI and conda.
This point release contains some fixes and improvements. Full changelog: https://t.co/YxgduCIc5L
Thank you to all the contributors and the tskit community. ❤️

[tskit-dev @tskit_dev]

📣"The ARG revolution in population and statistical genetics"
👨‍🏫An invited keynote by @WilderWohns at the SMBEeverywhere symposium.
🗓️Sep 30th at 10am EDT

Details here:
https://t.co/pbN1H0Vjww