Yuan He

Associate Professor at Beijing Zhongguancun Academy | Human Genetics & AI for Biology

[Zeyu Chen @ZeyuCHEN19]

Hi folks, back to twitter after 2 yrs~I would like to share my lab's first work entitled "Reconstructing sequence-grammar trajectories enables interpretable and tunable cis-regulatory element design", posted on bioRxiv: https://t.co/Yh1cugwalC

[Benj Shapiro @benjdshapiro]

Excited to share our paper on Bayesian Multi-View Clustering as part of F1000's collection on Machine Learning in Genomics! Huge thanks to @alexisjbattle for her support on this project. https://t.co/QMndpIRb4k

[Ben Strober @BennyStrobes]

So excited to share our newest preprint. We developed SURGE to identify context-specific eQTLs from single-cell eQTL data without requiring pre-specification of the contexts of interest.
https://t.co/NqXuDmvZ84

[Yuan He @YuanHe7]

@HWenpin @kiros_berhane @Columbia Huge congrats Wenpin!

[Michael Schatz @mike_schatz]

Congratulations to @YuanHe7 and @alexisjbattle @HopkinsEngineer

[Yuan He @YuanHe7]

@casey6r0wn Thank you Casey!!! It has been great working with you along the way and going forward!

[Yuan He @YuanHe7]

@mike_schatz @alexisjbattle @HopkinsEngineer Thank you so much Mike!!!

[Nae-Chyun Chen @naechyun_chen]

Happy to announce LevioSAM2 https://t.co/PmbcxPnTRF. It goes beyond levioSAM by (a) lifting via chain files instead of just VCFs, (b) efficient lifting of complex CIGARs, (c) efficient support for short & long reads. 1/3

[Yuan He @YuanHe7]

@facts___matter @EJohnWherry Huge congrats Jo!

[Yuan He @YuanHe7]

@casey6r0wn never used marmite +1 😂 want to try it now!

[Ben Strober @BennyStrobes]

Very excited to be giving a talk at #ASHG21 tomorrow on a new method we developed to identify context-specific eQTLs WITHOUT having to specify the context. The talk is Tuesday Oct 19 from 5:45-6pm EST (PrgmNr 1144). Should be a fun session!

[Junwei Shi @junwei_s]

Please RT: Shi Lab is seeking bioinformatics postdoc and/or staff. Great opportunity to work on exciting projects, including high-throughput CRISPR genetics screens, epigenome profiling, and single cell profiling. If interest, DM or email me jushi#upenn.edu.

[Yuan He @YuanHe7]

@princyparsana Thank you Princy!!!

[Yuan He @YuanHe7]

@kauralasoo @alexisjbattle @eQTLCatalogue Thank you Kaur! Glad it is helpful!

[Yuan He @YuanHe7]

I'd also like to thank @casey6r0wn for the continuous strong support and great advice on two projects! Thank you @BenLangmead, @jihk99 for being my committee, and supporting me starting from PhD application to the job search now.

[Yuan He @YuanHe7]

Thank you for being tremendously supportive! Thank you for making this journey worthwhile❣️ very excited to see the final piece of work coming out soon!

[Alexis Battle @alexisjbattle]

I am proud to announce that @YuanHe7 successfully defended her thesis this morning! Reminders of her PhD work https://t.co/Z1EEGXHOmF and https://t.co/GGAq36khew, and stay tuned for an upcoming paper on chromatin accessibility QTLs from all public ATAC data!

[Yuan He @YuanHe7]

@casey6r0wn Thank you Casey! Thank you for your great advice and encouragement along the way!!

[Yuan He @YuanHe7]

My thesis defense is 10am EST tomorrow, feel free to swing by! Title: Deciphering the genetics of complex traits via large-scale sequencing data integration. Zoom link: https://t.co/dOLlXwIWWt

[Anshul Kundaje @anshulkundaje]

Is there a portal/database that collates or links to all published QTL datasets/papers focused on chromatin/binding (caQTL, dsQTL, histoneQTL, bindingQTL)? cc @alexisjbattle @tuuliel @danjgaffney @sbmontgom @OpenTargets @XShirleyLiu @jkpritch @OliverStegle @GosiaTrynka

[Michael Schatz @mike_schatz]

Interested in cloud computing and genomics? Im hiring for a junior project manager for the @useAnVIL! https://t.co/NR67M67VLd