This is a new step for accessible, FAIR bioimage AI π
Try the tool π https://t.co/PTedoLZXKX
Contribute your models π§βπ¬ And join the community making bioimage analysis open & reproducible!
#BiaPy#GalaxyProject#BioImageAnalysis#Bioimaging
π Big news: BiaPy meets Galaxy! β΄οΈπ€π
You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.
π https://t.co/PTedoLZXKX
#BioImageAnalysis#GalaxyProject#AI4Life#Bioimaging
π€ And thereβs more! Thanks to this integration, you can also tap into the π¦ BioImage Model Zoo π§¬.
Pretrained models can now be run straight through Galaxy with BiaPy, bringing community AI models to your data in just a few clicks.
#BioImageModelZoo#OpenScience
π Excited to share that our work on BiaPy has been published today in Nature Methods!
BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. π(1/7)
π https://t.co/DRH6yVEyuJ
#DeepLearning#BioimageAnalysis#BiaPy
π Want to try BiaPy?
Check out the full documentation and tutorials here:
π https://t.co/rP2C6o5II6
π https://t.co/WTQSfAPIrz
Contribute, test, and join the community β BiaPy is open source! (6/7)
#OpenScience#Microscopy#AI
and 4β£, on Friday at 10:45am (Sala Toledo), I will be presenting the history and current state of @BiaPyX with my talk "BiaPy: Bioimage Analysis workflows for all audiences", see you all there! π
BiaPy β΄οΈ will be at SPAOM24 in Toledo twice! We'll lead a community workshop (Day 2) and @IgnacioArganda will give an invited talk (Day 3) about our library and application βΊοΈ See you all there! #SPAOM2024
π We have updated our preprint in @biorxivpreprint π° It explains better the current state of #BiaPy β΄οΈ while describing as well its limitations π€ Hope you like it!
"BiaPy: Accessible deep learning on bioimages" https://t.co/nAJ5159xVs
π For a fast overview on how to reuse models from the @bioimageio zoo π¦in our notebooks π (including exporting them too), check our video
"BiaPy: Import & Export BioImage Model Zoo models in Notebooks" https://t.co/UuvRPSvWl2 via @YouTube by @IgnacioArganda
3β£ and of course, programmatically π€ by editing the YAML configuration file.
We have a dedicated page in the documentation π that explains the whole process in all three cases:
https://t.co/swlWduOtp6
Would you like to use a model from the @bioimageio zoo π¦ as core model of your BiaPy β΄οΈ workflow? No worries! You can easily do that either π
1β£ from the GUI π₯οΈ, specially if you follow the instructions of our friendly wizard πͺπ§ββοΈ
2β£ from the notebooks, by listing π all available models compatible with your task, then selecting the π¦ zoo as model source, and finally introducing the nickname of the model that best fits your needs:
π Our code-free notebooks are designed to be self-explainable and (hopefully π€) easy to use and follow. Nevertheless, in case you feel overwhelmed by them, you can have a look at our walkthrough video on BiaPy Notebooks https://t.co/dUYLOdjMkH via @YouTube by @IgnacioArganda