CTCF Papers 📚

PubMed bot reporting all CTCF papers. Maintained by @TeifLab. Also see @TF_binding_bot, @Nucleosome_Bot, @generegulation

[Elena Pugacheva @ElenaPugachev12]

Excited to share our latest study published in Nucleic Acids Research: https://t.co/ZSFQt4DI57
It’s the cover story for Issue #12! We drew inspiration from Greek mythology to illustrate CTCF’s constant struggle in shaping the 3D genome architecture.

[Gene Regulation @generegulation]

Footprint-C reveals transcription factor modes in local clusters and long-range chromatin interactions [Liu et al, 2024] https://t.co/4ycdplTA3o
▶️At one-dimensional level - modes of TF co-occupancy
▶️At pairwise contact level - multiway chromatin interactions of different TFs

[Elena Pugacheva @ElenaPugachev12]

CTCF binding landscape is established by the epigenetic status of the nucleosome, well-positioned relative to CTCF motif orientation https://t.co/FlDw62Vwdj

[Victor V. Lobanenkov @boris_ctcf]

Our new CTCF breakthrough ms has been posted today at https://t.co/AXYbzEbope with the following Graphical Abstract:

[Jane Skok @jane_skok]

Factors that determine cell type–specific CTCF binding in health and d... https://t.co/Dfp38sl3js

[Karsten Rippe @KarstenRippe]

1/ 🤔 Do #chromatinlooping-mediated promoter-#enhancer interactions drive gene expression? Or is the local enrichment of transcription factors into hubs/#condensates the key factor? Our AC/DC model of gene regulation at bioRxiv https://t.co/ng40XtC8VD provides a new view on this.

[Teif Lab @TeifLab]

We have an opening for a three-year postdoctoral position for a researcher with expertise in machine learning and genome bioinformatics, to work on cancer diagnostics (liquid biopsies). Please apply here: https://t.co/wT5EuK5GmS

[Genomics at Essex @GenomicsAtEssex]

Registration (free!) and abstract submission now open! Please, spread the word.
https://t.co/WbJ1T7zzHE

[Gene Regulation @generegulation]

Nucleus is looking for a new Editor-in-Chief. Nucleus is a fully Open Access journal by @tandfonline. Application deadline October 18, 2024

Further information including requirements and application process can be found here:
https://t.co/08rwYPDYwQ

[Denis Duboule @Duboule]

The amazing coincidence between the topology of CTCF binding sites within Hox clusters and two major transitions in the vertebrate body plan. 🙏 Hocine @Hocine_Rekaik @cdf1530 @the_Node @CTCF_Papers #FlattenedEmbryo https://t.co/yzBdnznKcS

[Elena Pugacheva @ElenaPugachev12]

Happy to share! Our latest publication in Genome Biology unveils how BORIS/CTCFL epigenetically reprograms transcriptionally inactive intronic CTCF sites into alternative promoters: https://t.co/N5Oygb4JVe

[CTCF Papers 📚 @CTCF_Papers]

Locus folding mechanisms determine modes of antigen receptor gene assembly https://t.co/xlO82pPgiE

[CTCF Papers 📚 @CTCF_Papers]

DNA-sequence and epigenomic determinants of local rates of transcription elongation https://t.co/W7w3pmOCLw

[CTCF Papers 📚 @CTCF_Papers]

LncRNA SLC7A11-AS1 stabilizes CTCF by inhibiting its UBE3A-mediated ubiquitination to promote melanoma metastasis https://t.co/a6wdEICxQD

[CTCF Papers 📚 @CTCF_Papers]

Benchmarking DNA binding affinity models using allele-specific transcription factor binding data https://t.co/cjQiZP1Lut

[CTCF Papers 📚 @CTCF_Papers]

Differential methylation analysis in neuropathologically confirmed dementia with Lewy bodies https://t.co/pa90mdXcNN

[CTCF Papers 📚 @CTCF_Papers]

CTCF regulates hepatitis B virus cccDNA chromatin topology https://t.co/CubLSna4Xi

[CTCF Papers 📚 @CTCF_Papers]

Multi-omics computational analysis unveils the involvement of AP-1 and CTCF in hysteresis of chromatin states during macrophage polarization https://t.co/HeBzB0j4pw

[CTCF Papers 📚 @CTCF_Papers]

A study on genotypes and phenotypes of short stature caused by epigenetic modification gene variants https://t.co/66idhcXsxd

[CTCF Papers 📚 @CTCF_Papers]

The counterpart congenital overgrowth syndromes Beckwith-Wiedemann Syndrome in human and large offspring syndrome in bovine involve alterations in DNA methylation, transcription, and chromatin configuration https://t.co/QrNmyumJul