CytoRSuite

CytoRSuite is an R package developed by @DillonHammill for the analysis of cytometry data.

[CytoRSuite @CytoRSuite]

The time has come to retire @CytoRSuite in favour of its successor @CytoExploreR! Thanks to everyone for their continued feedback on this project! Please make the switch to @CytoExploreR and check out the website to get started: https://t.co/58L09iiZsy

[CytoRSuite @CytoRSuite]

Automated compensation is fully supported in @CytoRSuite! Looks like it has helped a lot to reduce our fluorescent spillover issues! @openCyto #openscience #flowcytometry #cytometry

[CytoRSuite @CytoRSuite]

Compensation of fluorescent spillover is easy in @CytoRSuite! Automatically plot each compensation control in all fluorescent channels, with the unstained control overlaid as a reference to identify any issues. @openCyto #openscience #flowcytometry #cytometry

[CytoRSuite @CytoRSuite]

Want to use consistent colour(s) throughout for particular groups? This is easy with @CytoRSuite! Plots are fully customisable! @openCyto #openscience #flowcytometry #cytometry

[CytoRSuite @CytoRSuite]

With @CytoRSuite you can merge samples into treatment groups prior to plotting to display mean statistics per group. Our grouping variable is antigen concentration (0, 0.005, 0.05 & 0.5). Multiple grouping variables are supported! @openCyto #openscience #flowcytometry #cytometry

[CytoRSuite @CytoRSuite]

Check out these mixed gates in @CytoRSuite. The unstained control has been overlaid in black and contour lines added to aid in gating. Polygons, rectangles and ellipses are only some of the supported gate types! #openscience #flowcytometry #cytometry @openCyto

[CytoRSuite @CytoRSuite]

@SangerCytometry @github @CytoRSuite has a function cyto_fluor_channels() which returns only the fluorescent channels for any flow object. Could be useful in preventing indexing problems such as these...

[CytoRSuite @CytoRSuite]

@mikebarnkob @DillonHammill Thanks @mikebarnkob! Keen to get some feedback so I can make @CytoRSuite even better!

[CytoRSuite @CytoRSuite]

Stacked density distribution are fully supported in @CytoRSuite! Users can even gate stacked distributions! It is easy to adjust the degree of stacking and control which statistic to display - median fluorescent intensity (MedFI). #openscience #flowcytometry #cytometry @openCyto

[CytoRSuite @CytoRSuite]

Plot entire gating schemes with full back-gating support in @CytoRSuite! Plots are fully customizable. All gates manually drawn in R with @CytoRSuite! #openscience #cytometry #flowcytometry @openCyto

[CytoRSuite @CytoRSuite]

Do you want to interactively edit spillover matrices in (R)eal-time? Now you can with @CytoRSuite! Automatic compensation is also supported! Support for spillover spreading matrices is on the way... #openscience #cytometry #flowcytometry @openCyto

[CytoRSuite @CytoRSuite]

Say hello to manual gate drawing in R thanks to @CytoRSuite! Check it out on GitHub: https://t.co/yPgRSg9gFs. #openscience #cytometry #flowcytometry @openCyto