Cytoverse

Robust, open source BioConductor framework for automated flow data analysis.

[Greg Finak @GregFinak]

Excited that @OzetteAI closed a $6M seed round with support from @MadronaVentures @allen_ai
and Vulcan Capital. We are bringing unprecedented high resolution #singlecell profiling, developed at #FredHutch with @raphg, to bear on cancer #immunotherapy
https://t.co/DOoZbe8g0E

[Cytoverse @OpenCyto]

Feature request call! What would you like to see in the cytoverse tools? Go to https://t.co/rel5fw3emy and open a feature request and tell us what you think is missing! #ggcyto #opencyto #flowcytometry #cytoml #flowworkspace #cytolib
#singlecell #cytometry

[Greg Finak @GregFinak]

Happy to announce experimental tiledb support for https://t.co/qigv00TDTU tools. See the tiledb branch of cytolib on GitHub. This means R's flow tools can access data remotely in the cloud (e.g. on S3). #rstats

[Dillon Hammill @DillonHammill]

@CytoExploreR @CytoRSuite Thanks to everyone who provided feedback on @CytoRSuite and the @raphg lab for developing the open source tools required to build @CytoExploreR. Be sure to follow @CytoExploreR for updates and feature demos. Have fun exploring your data with @CytoExploreR.

[CytoRSuite @CytoRSuite]

Say hello to manual gate drawing in R thanks to @CytoRSuite! Check it out on GitHub: https://t.co/yPgRSg9gFs. #openscience #cytometry #flowcytometry @openCyto

[Greg Finak @GregFinak]

Our new paper with @raphg serves as a prototype manuscript of the new Cytometry A's new manuscript format (https://t.co/fAZXruUkZt ) and describes how the #rstats package CytoML (https://t.co/0fBs7xa1Ps ) enables reproducible cytometry analysis and cross-platform data sharing.

[Greg Finak @GregFinak]

Sharing tidy, standardized, reproducible data sets for publications and collaborations can be challenging. We wrote an R package, DataPackageR, to help with that. It's worked well for us, so we wrote it up. https://t.co/tLXgkaxoQP #rglab #raphg #rstats

[Greg Finak @GregFinak]

Visualize #cytometry data using the grammar of graphics. Our paper describing the new ggcyto #rstats package is now live and #openaccess at #bioinformatics https://t.co/a1jLhyyRqs with @raphg, Mike Jiang and Phu Van.

[Greg Finak @GregFinak]

Since it's #cyto2017 Beta release of @OpenCyto command line tools. https://t.co/g8yhxgk25O
Mac and Linux support. Take em' for a spin.

[Bioconductor @Bioconductor]

@Bioconductor #rstats flow cytometry user input / enthusiasm needed! https://t.co/YIwL4s8jrJ

[Greg Finak @GregFinak]

Do you use the core cytometry infrastructure in BioConductor? Users and developers, we need to know! Send us a note. #bioc #flow #funding

[Cytoverse @OpenCyto]

@Yunadal Thanks, looking into it.

[Cytoverse @OpenCyto]

Our new R package, CytoML enables transfer and viz. of gated cytometry data between R @FlowJoNow and @cytobank https://t.co/nGHzA899gt.

[ImmuneSpace @ImmuneSpace]

Come join the ImmuneSpace dev team and help shape the future of #open #immuneprofiling #bigdata https://t.co/cTApMyzqTl @LabKey #rstats

[ImmuneSpace @ImmuneSpace]

Remember to give ImmuneSpaceR a try to query and download #HIPC data from #rstats available from @Bioconductor https://t.co/zjP1aAD0fF

[ImmuneSpace @ImmuneSpace]

Tip: If you prefer to download data manually, you can use the Data Finder and use our new export functionality. Works for raw data too!

[Cytoverse @OpenCyto]

Coming soon: export OpenCyto gated data to flowJo readable workspaces!

[Cytoverse @OpenCyto]

Do you need to use FMO controls, or other negative controls to set gate thresholds in openCyto? Here's how to do tha
http://t.co/ZNb9JIHcGQ

[Cytoverse @OpenCyto]

@Rhodnius Yes, OpenCyto can read FlowJoX wsp files. Get in touch if you have difficulties, we've had limited FlowJoX users..so limited tests