The ETE toolkit

ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of phylogenetic trees.

[The ETE toolkit @etetoolkit]

Checking this upcoming ETE course

[Jaime Huerta-Cepas @jhcepas]

Places are filling up fast!

If you are interested in phylogenomic data analysis and tree visualisation with our new ETE4 software version, don't forget to register for our upcoming (free) course in Madrid. 👇
Travel grants still available (also overseas)
https://t.co/XJ1X5wRthT

[Jaime Huerta-Cepas @jhcepas]

@deng_ziqi @etetoolkit One of the coolest features of #TreeProfiler IMO, is its ability to automatically compute consensus/summary information for internal nodes, which integrates seamlessly with the new interactive zooming and auto-colapsing features of the #ete4 tree visualization engine. @deng_ziqi

[Jaime Huerta-Cepas @jhcepas]

Another step in our goal to build a phylogenomics framework that works well with large datasets: TreeProfiler, a handy tool by @deng_ziqi that can map/profile any kind of data against huge trees.

Tree + TSV file = auto viz with @etetoolkit v4.0

https://t.co/dDUy5gPzFi

[The ETE toolkit @etetoolkit]

Course announcement - Phylogenomic data analysis and visualization using ETE Toolkit.
Where: Madrid, Spain.
When: Nov 13-17th, 2023
Registration (free): https://t.co/PYtqMMiEN7
Topics: programmatic reconstruction, analysis, handling and visualization of phylogenetic trees.

[The ETE toolkit @etetoolkit]

@damdevienne Hi Damien! also possible in PhyloCloud, which uses ete4 in the backend. @deng_ziqi

https://t.co/abeVAWH7Mv

[The ETE toolkit @etetoolkit]

@dongzhang0725 @CBGP_Madrid @cziscience nope, we have written a new web based viewer. The old treeview module will be kept though

[The ETE toolkit @etetoolkit]

Today we started our first hackathon! 5 days , 14 people coding together at @CBGP_Madrid + a few other online.
Our main goal is to boost the release of the new ete4 version, which will include a new visualization system able to explore huge trees! #ETE4 funded by @cziscience

[The ETE toolkit @etetoolkit]

We are starting our third #ETE4 hackathon day. Yesterday was very productive, with ppl making progress in the visualization of large gene phylogenies with taxonomic info, biogeographic data, HyPhy bindings, phylogenetic profiling, tree handling, and much more.

[The ETE toolkit @etetoolkit]

@andrewjroger @jhcepas @ace_gtdb @NCBI @jordiburcas @cziscience @CBGP_Madrid using the ete API you could delete, detach and reconnect nodes, but there are no built-in functions to generate all possible rearrangements

[The ETE toolkit @etetoolkit]

A call to our community: New discussion forum, and upcoming Hackathon supported by @cziscience

If interested in participating (in any way), please get in touch so we can better plan the logistics.

https://t.co/4j5nZZYt1B

[Jaime Huerta-Cepas @jhcepas]

@etetoolkit @ace_gtdb @NCBI @jordiburcas @cziscience @CBGP_Madrid smooth zooming, auto-scaling branch lengths, minimap navigation, topology manipulation, rect & circ views, permalinks to scene region, search..

Next major steps:merging with @etetoolkit 's viz grammar for programmatic use & seq.alg support. @jordiburcas @cziscience @CBGP_Madrid

[Jaime Huerta-Cepas @jhcepas]

Interactive huge tree visualization in @etetoolkit getting closer. Check out our current online demo:

https://t.co/s6NqcIwfCc

Navigating @ace_gtdb bact tree and complete @NCBI Taxonomy is now possible!

Awesome work by @jordiburcas w/ the support of @cziscience @CBGP_Madrid

[ECCB2026 Geneva, Switzerland @ECCBinfo]

Exciting tutorial "Reconstruction, analysis, and visualization of #phylogenomic data with the @ETEtoolkit" to be held in the New Trends in Bioinformatics by ECCB.

Register to the #ECCB2020 and have the opportunity to join this tutorial! 👇

[The ETE toolkit @etetoolkit]

We got a full day tutorial accepted on ETE Toolkit at @eccb2020, which has been transformed in a virtual 3h tutorial. We will try to touch all major features with a bunch real examples. Only intermediate python level required. Registration should be open
https://t.co/zaojv6tEDQ

[Bui Quang Minh @bq_minh]

really excited to see this... well deserved! We have been using @etetoolkit for rendering trees from IQ-TREE web server

[CBGP @CBGP_Madrid]

#NewsCBGP | CBGP team awarded Chan Zuckerberg grant to support scientific software for phylogenomic analysis

🇪🇸 - https://t.co/K1bHDhlhZR
🇬🇧 - https://t.co/96ZrLbR6hG

#somosUPM

[Jaime Huerta-Cepas @jhcepas]

After more than a decade developing & maintaining ETE, getting the recognition of essential software in science by @cziscience is making everyone in the @etetoolkit team a bit happier :) @fransua_serra @deng_ziqi @renato_alvs @anahernandezpl1 @CBGP_Madrid @La_UPM @INIA_es & more

[Jaime Huerta-Cepas @jhcepas]

I am very glad to announce that we have been awarded with a grant from @cziscience to support the development of @etetoolkit. This will boost the release of a new version focused on better tree comparison methods and large tree visualization. @CBGP_Madrid 1/2

[The ETE toolkit @etetoolkit]

@hsanderson_phd we usually load iqtree treefiles without problems. Do you have an example?

[Jaime Huerta-Cepas @jhcepas]

thanks for this summary thread @yoyehudi !