nf-core

A community effort to collect a curated set of analysis pipelines built using Nextflow. Mastodon: @[email protected]

[nf-core @nf_core]

The @nf_core paper is out in @NatureBiotech ! 🍾 https://t.co/ZnPGuFDBd1 📖🤓 Read about how the @nf_core framework provides community-curated @nextflowio bioinformatics pipelines, ready for use across any institute or research facility ✨🧬🧫🖥️ (1/5)

[NVIDIA Healthcare @NVIDIAHealth]

🧬 NVIDIA Parabricks HaplotypeCaller is now available in nf-core/sarek, a widely adopted germline analysis pipeline on @nf_core.

Building on Sarek's existing Parabricks-accelerated alignment, germline variant calling can now also take advantage of GPU acceleration.

Try it ➡️ https://t.co/KQqwWWBY39

[RNAcentral @RNAcentral]

We're excited to announce the first release of the #nfcore #rnastructurome pipeline! 🎉 https://t.co/pOBzfBxr8g
This pipeline provides a standardised workflow for analysing public chemical probing datasets to generate RNA reactivity profiles and predict #RNA secondary structures.

[Nextflow @nextflowio]

Just 1 month to go until Nextflow Training and @nf_core Hackathon in Barcelona! 🇪🇸 Here's a sneak peak at exclusive swag you'll receive: stickers, t'shirts, socks and more!🧦 Register by Sep 24 to join the fun: https://t.co/WRhIFs8uWu #NextflowSummit

[Samuel Lampa - Also: smllmp.bsky.social @smllmp]

And shortly after that, TaxProfiler, the @nf_core #metagenomics pipeline had a new major release: 2.0, adding multiple cool new classifiers (metacache, sylph and melon)! Great work by Sofia, Lili, @jfy133 and others! https://t.co/HV6GNSaxVG

[Nextflow @nextflowio]

What a collaborative few days of #Nextflow Training and @nf_core Hackathon here in Boston!🌏Congrats to our rubber duck winners.🦆Huge thanks to everyone for making such a great event!

[Seqera @SeqeraLabs]

Day 2 of @nextflowio training and the @nf_core community hackathon is underway! After a fantastic first day of learning and collaborating, we're back and ready to build. #NextflowSummit

[Nextflow @nextflowio]

A fantastic end to day 1 of the @nf_core hackathon! Great to see progress across projects including cellpainting, sarek parabricks integration, dragen pipeline initiation, and crispr!🤩Looking forward to more updates and progress tomorrow! 👏

[Nextflow @nextflowio]

The @nf_core Hackathon has officially kicked off here in Boston! 🎉 Whether you're an experienced Nextflow developer or just getting started, this is where great pipelines and even better connections are made. Time to build something amazing together! #NextflowSummit

[Nextflow @nextflowio]

Less than 1 hour to go until the community @nf_core hackathon begins here in Boston!🍏The team are ready to go.

[nf-core @nf_core]

Pipeline release! nf-core/rnafusion v3.0.1b - 3.0.1b!

Please see the changelog: https://t.co/H99nTdtCu5

[nf-core @nf_core]

Pipeline release! nf-core/rnafusion v3.0.1b - 3.0.1b!

Please see the changelog: https://t.co/H99nTdt4Ex

[nf-core @nf_core]

Pipeline release! nf-core/pixelator v2.2.0 - nf-core/pixelator 2.2.0!

Please see the changelog: https://t.co/GJ6v1glLL4

[nf-core @nf_core]

Pipeline release! nf-core/pixelator v2.1.0 - nf-core/pixelator 2.1.0!

Please see the changelog: https://t.co/FZZUV5I0N6

[nf-core @nf_core]

Pipeline release! nf-core/pixelator v2.0.0 - nf-core/pixelator 2.0.0!

Please see the changelog: https://t.co/gw6g441W6P

[nf-core @nf_core]

Pipeline release! nf-core/oncoanalyser v2.0.0 - 2.0.0 - Flame Robin!

Please see the changelog: https://t.co/KPUG9kkAB5

[nf-core @nf_core]

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://t.co/cYkb50KSI7

[nf-core @nf_core]

Bring along anything you are working on and meet others in the Asia Pacific Nextflow and nf-core community.

For more information and links, see the nf-core blog post:

https://t.co/Apf2VYqIqF

[nf-core @nf_core]

nf-core weekly help desk is coming to Asia Pacific!

After the success of the European and American time zones, help desk is coming to Asia Pacific starting Wednesday, March 12.

Join this week's hosts, @awgymer and @Chris_Hakk, and discuss all things Nextflow & nf-core.

[nf-core @nf_core]

Who:
- Anyone

When:
- Wednesdays, 3.00 PM NZDT
- Wednesdays, 1.00 PM AEDT
- Wednesdays, 12.30 PM ACDT
- Wednesdays, 12.00 PM AEST
- Wednesdays, 11.30 AM ACST
- Wednesdays, 11.00 AM AWST

Where:
- Gather Town

[nf-core @nf_core]

Pipeline release! nf-core/demultiplex v1.6.0 - 1.6.0!

Please see the changelog: https://t.co/MBLs59OASs