The Tweet Of GMOD

The Generic Model Organism Database project: open-source software for genome-scale biological data.

[The Tweet Of GMOD @gmodproject]

@seacaptainpolls Scallons

[The Tweet Of GMOD @gmodproject]

(2/2) Please steer them my way. My resume and publication list are on my personal website: https://t.co/Zq22UYRqTZ

[The Tweet Of GMOD @gmodproject]

This is Scott; my contract working on GMOD related tasks (including JBrowse, Chado, and Tribal) and other projects like https://t.co/lubvU928wC and https://t.co/12UGs0slPE is likely to come to and end soon. If you know of anybody looking for help with things like this, (1/2)

[SoyBase.org @SoyBaseDatabase]

Frontend Developer position
Required to apply @ https://t.co/TDiM42rt8T
-Responsible for designing, developing, testing, & debugging responsive web applications
-Using #javascript , HTML, CSS, GitHub, Jekyll & Liquid
#JobOpening #Hybrid #FrontEndDeveloper

[The Tweet Of GMOD @gmodproject]

#JBrowse2 workshop about to start at #pag31 in town and country D. Get some updates and a hands on tutorial for setting up your own JBrowse 2!

[Cristina Gamba @gamba_cristina]

Did you know that you could get variant analysis, methylation and phasing in a single data analysis workflow? #EPI2ME human variation workflow, best practice @nanopore data analysis, with great reports and integrated genome browser. #nanoporeconf

[Laura Luebbert, PhD @NeuroLuebbert]

I created a Colab tutorial that checks if a gene/transcript ID has an associated crystal structure, checks if related proteins with associated crystal structures are available, and then compares those to a de novo structure prediction:

https://t.co/P24WrJzhpR

[Chris Wright @chrisnrg]

The application even includes jbrowse2 for no fuss viewing of read alignments straight. Analysis a manual review in a single application.

https://t.co/DyQtEgdj84

[The Tweet Of GMOD @gmodproject]

(Geez, squeezing the description of this figure into 1000 characters was hard!)

[The Tweet Of GMOD @gmodproject]

I am happy to announce that the #JBrowse2 paper has be published in Genome Bio. There is lots of cool stuff: synenty, structural variation, plugins, multi chromosome and multi genome views, a graphical configuration editor, a desktop and easy-to-embed apps https://t.co/cMZAqFZYu1

[The Tweet Of GMOD @gmodproject]

Here's figure 1 to whet your appetite.

[SoyBase.org @SoyBaseDatabase]

During the #Soybean Breeders Workshop the SoyBase team asked the workshop attendees to vote for their favorite https://t.co/ieSvXJWfDc tool. The word cloud was created from the community's votes.
#soybeans #plantbreeding #research #GenomeBrowser #BLAST

[The Tweet Of GMOD @gmodproject]

It's that time again: I'm going to start bugging people for letters of support for the @usejbrowse project. If you have time and are a #JBrowse user, please consider writing a letter. JBrowse is a big part of many genomics projects, and we want to make sure it continues to grow.

[The Tweet Of GMOD @gmodproject]

My friends at CIRAD Montpellier, France are looking for bioinformatics web developer familiar with #GMOD tools (@TripalProject @galaxyproject, @usejbrowse) to work on a rubber and palm tree genome project: https://t.co/ycOl6uM6fS

[The Tweet Of GMOD @gmodproject]

To go along with the #JBrowse2 tutorial at #PAG30, we also have three talks by JBrowse folks:

@rbuels gave an intro: https://t.co/GaR0kS7RrM

@cmdcolin gave an overview of features: https://t.co/1lQF76wcXN

Caroline Bridge talked about the plugins: https://t.co/1D6BqTd9zI

[The Tweet Of GMOD @gmodproject]

At #PAG30 earlier this month, we presented a hands on #JBrowse2 tutorial, where the attendees logged into a server, ran through setting up a JBrowse 2 instance and added a lot of data, including #synteny and #structuralVariation https://t.co/Pw658f8U6l

[The Tweet Of GMOD @gmodproject]

#GMOD at #PAG today: #JBrowse workshop 1:30 in T&C D (including hands on tutorial), #JBrowse from an implementer's perspective in Next Gen Annotation in Pacific E at 4:20 (blaze!)

[The Tweet Of GMOD @gmodproject]

Darn it, I forgot to include useful things like time and location (I've gotten used to longer posts elsewhere so was worried about keeping it brief!): the session is at 4:00 in Town & Country D (the computer demo room)

[The Tweet Of GMOD @gmodproject]

Join the #tripal folks for their #PAG30 session: https://t.co/L5vbAZPtfA Topics include v4, biocuration, #jbrowse integration, intro to https://t.co/4uAWpTA6jl , and a retrospective by @FicklinStephen