Our new analysis of single-cell spatial transcriptome data from 25 million neurons in the macaque cortex reveals the non-random distribution of neurons and hints at the computational architecture of the cortex. https://t.co/biIAWpFX9O
Today I'm incredibly proud to share our lab's first wet lab paper, now available as a bioRxiv preprint.
This is also the first massive milestone since it's my very first wet lab paper as a bioinformatician who started an experimental wet-lab from scratch
https://t.co/BUQUm5Z9GQ
The first work of the #FalconeLab is finally out!!! 🤩
A story of #astrocytes from evolution to disease. Thanks everyone who made this possible!
Varicose projection astrocytes: Conserved reactive cells in brain pathology | @ScienceAdvances https://t.co/BzNbnveFlO
@TowsonU
Our new analysis of single-cell spatial transcriptome data from 25 million neurons in the macaque cortex reveals the non-random distribution of neurons and hints at the computational architecture of the cortex. https://t.co/biIAWpFX9O
9. In the visual pathway, primary information processing uses larger clusters.
10. In the default mode network (DMN), neuron clusters tend to be smaller.
11. Specific brain regions utilize distinct combinations of neuron cell types.
6. Cluster size is positively correlated with the number of partnering clusters.
7. In coupled excitatory and inhibitory spatial clusters, the E–I ratio is positively correlated.
8. The total number of cells in excitatory and inhibitory clusters is similar.
3. There are more inhibitory neuron clusters than excitatory clusters, but they tend to be smaller in size.
4. There are many clusters composed solely of excitatory cells, with unknown functions.
5. Adjacent spatial clusters use similar cell types.
More details: 1. The number of inhibitory neurons increases as the number of nearby excitatory neurons increases.
2. In deeper cortical layers, the proportion of excitatory neurons is higher.
3. Clusters of excitatory neurons primarily consist of excitatory-excitatory cell combinations, while inhibitory clusters mainly include excitatory-inhibitory cell combinations.
4. Most excitatory and inhibitory neuron clusters have spatial partnerships with one another.
We have uncovered several key patterns in the spatial distribution of neurons in the cerebral cortex:
1. Neurons are distributed in a highly non-random manner within the cortex, with over 75% located in different spatial clusters.
Latest paper out in @Nature this week: an atlas integrating 36 single-cell transcriptomic datasets spanning 26 protocols for making neural hashtag#organoids
Effort led by @TreutleinLab@fabian_theis and @GrayCampLab
In Figure 4 you can also find the pojection of the neural organoid morphogen screen developed by Neal @neal_amin and Kevin @kevinwkelley in the lab