Paper2Agent brings research papers ‘to life.’
This open tool from @Stanford transforms static papers into interactive AI assistants that can explain and apply their methods.
It builds on the MCP and works in 2 layers:
- Paper2MCP: Extracts the paper’s methods and code into an MCP server.
- Agent layer: Links the MCP server to a chat agents.
The result is a real conversational assistant for the paper.
▪️ Paper2Agent has already worked impressively for agents that use AlphaGenome, Scanpy, and TISSUE tools.
Here are the details 🧵
AlEx 2025 on March 18 was a resounding success. A huge thank you to all participants, speakers, and volunteers for making this event enriching and inspiring. Your enthusiasm drives the spirit of scientific exploration.
@BiophysicalSoc@iiserkol#Biophysics#studentchapter
My lab recently built MolModa, a free, browser-based molecular docking tool. No installs, no logins—just docking that runs locally for speed and security. I hope you’ll give it a try and help spread the word! https://t.co/dW20Yg5sHU #MolecularDocking#CADD#ComputationalBiology
Announcing AlphaFold 3: our state-of-the-art AI model for predicting the structure and interactions of all life’s molecules. 🧬
Here’s how we built it with @IsomorphicLabs and what it means for biology. 🧵 https://t.co/gjw6Ip4F2M
Excited to announce the offline celebration of International Biophysics Week on March 27th,2024 @GangeyaChapter focusing on membrane biophysics! Join us for engaging discussions!
#BiophysicsWeek@BiophysicalSoc@iiserkol
Excited to announce the offline celebration of International Biophysics Week on March 27th,2024 @GangeyaChapter focusing on membrane biophysics! Join us for engaging discussions!
#BiophysicsWeek@BiophysicalSoc@iiserkol
Exploring the Alternative Conformation of a Known Protein Structure Based on Contact Map Prediction
https://t.co/75f7yCdsmo
#JCIM Vol64 Issue1 #Bioinformatics
For those who wanted the code, it is available (and also improvable) at this link: https://t.co/O4ypcEXo5t
In this brief article, you will find some additional explanations about eigenvalues figures: https://t.co/1uRPeybEOQ
We are back with the International Biophysics Week Celebration 2023. Use the Google meet link: https://t.co/D05WYKF6Ce to join us tomorrow from 10.50 am. Looking forward to your active participation...
#BiophysicsWeek@BiophysicalSoc@iiserkol
We are looking for a #postdoc (Institute-funded PDF) who will be working on MD simulations, enhanced sampling, ML methods, & their application in chemistry and materials. (webpage: https://t.co/Z4DlFjHbBH)
Details here: https://t.co/XdPyc5M3E5
Pls apply/RT #compchem
SynapseML unifies several existing ML frameworks and new @microsoft algorithms in a single, scalable API, with the goal of simplifying the creation of massively scalable machine learning pipelines.
1/5 Symmetric Molecular Dynamics (symd) is MD where positions are always symmetric. It can be used to crystallize w/ any symmetry group. In our first work, we use it to make an atlas of all stable Lennard-Jones solids
Paper: https://t.co/0m0wjn6xLm
Code: https://t.co/6v1Bk3G5LY