Gangeya Student Chapter

Biophysical Society affiliated Second Student Chapter in Asia

[Turing Post @TheTuringPost]

Paper2Agent brings research papers ‘to life.’

This open tool from @Stanford transforms static papers into interactive AI assistants that can explain and apply their methods.

It builds on the MCP and works in 2 layers:

- Paper2MCP: Extracts the paper’s methods and code into an MCP server.
- Agent layer: Links the MCP server to a chat agents.

The result is a real conversational assistant for the paper.

▪️ Paper2Agent has already worked impressively for agents that use AlphaGenome, Scanpy, and TISSUE tools.

Here are the details 🧵

[Gangeya Student Chapter @GangeyaChapter]

AlEx 2025 on March 18 was a resounding success. A huge thank you to all participants, speakers, and volunteers for making this event enriching and inspiring. Your enthusiasm drives the spirit of scientific exploration.
@BiophysicalSoc @iiserkol #Biophysics #studentchapter

[Gangeya Student Chapter @GangeyaChapter]

@KRITIALAM3 @BiophysicalSoc @iiserkol This time we r doing it full offline.

[Gangeya Student Chapter @GangeyaChapter]

Don’t miss *AlEx 2025*, March 18, 2025 , Organized by Team Gāṅgeya,@GangeyaChapter the Student Chapter of Eastern India.
Join us for an exciting day of cutting-edge insights in biophysics.

@BiophysicalSoc
#Biophysicsweek
#studentchapter
@iiserkol

[DurrantLab @LabDurrant]

My lab recently built MolModa, a free, browser-based molecular docking tool. No installs, no logins—just docking that runs locally for speed and security. I hope you’ll give it a try and help spread the word! https://t.co/dW20Yg5sHU #MolecularDocking #CADD #ComputationalBiology

[Andrew White 🐦‍⬛ @andrewwhite01]

Molecular dynamics requires a lot of expert knowledge to set-up and analyze simulations. We set out to automate it with LLM agents: MDCrow!

[Google DeepMind @GoogleDeepMind]

Announcing AlphaFold 3: our state-of-the-art AI model for predicting the structure and interactions of all life’s molecules. 🧬

Here’s how we built it with @IsomorphicLabs and what it means for biology. 🧵 https://t.co/gjw6Ip4F2M

[Gangeya Student Chapter @GangeyaChapter]

Excited for tomorrow's event.
@BiophysicalSoc @iiserkol #Celebration #biophysicsweek

[Gangeya Student Chapter @GangeyaChapter]

Excited to announce the offline celebration of International Biophysics Week on March 27th,2024 @GangeyaChapter focusing on membrane biophysics! Join us for engaging discussions!
#BiophysicsWeek @BiophysicalSoc @iiserkol

[Gangeya Student Chapter @GangeyaChapter]

Excited to announce the offline celebration of International Biophysics Week on March 27th,2024 @GangeyaChapter focusing on membrane biophysics! Join us for engaging discussions!
#BiophysicsWeek @BiophysicalSoc @iiserkol

[JCIM & JCTC Journals @JCIM_JCTC]

Exploring the Alternative Conformation of a Known Protein Structure Based on Contact Map Prediction
https://t.co/75f7yCdsmo
#JCIM Vol64 Issue1 #Bioinformatics

[Simone Conradi @S_Conradi]

For those who wanted the code, it is available (and also improvable) at this link: https://t.co/O4ypcEXo5t
In this brief article, you will find some additional explanations about eigenvalues figures: https://t.co/1uRPeybEOQ

[Angshuman Nag @AngshumanNag4]

Condition of a PhD student, after her/his supervisor suggests to carry out a new kind of research experiment..

[Gangeya Student Chapter @GangeyaChapter]

We are back with the International Biophysics Week Celebration 2023. Use the Google meet link: https://t.co/D05WYKF6Ce to join us tomorrow from 10.50 am. Looking forward to your active participation...

#BiophysicsWeek @BiophysicalSoc @iiserkol

[Tarak Karmakar @TarakChem]

We are looking for a #postdoc (Institute-funded PDF) who will be working on MD simulations, enhanced sampling, ML methods, & their application in chemistry and materials. (webpage: https://t.co/Z4DlFjHbBH)
Details here: https://t.co/XdPyc5M3E5
Pls apply/RT #compchem

[Peter Lee @peteratmsr]

SynapseML unifies several existing ML frameworks and new @microsoft algorithms in a single, scalable API, with the goal of simplifying the creation of massively scalable machine learning pipelines.

[Biophysical Society @BiophysicalSoc]

Biophysics at the Dawn of Exascale Computers thematic meeting is underway in Hamburg! #BPShamburg2022

[Andrew White 🐦‍⬛ @andrewwhite01]

1/5 Symmetric Molecular Dynamics (symd) is MD where positions are always symmetric. It can be used to crystallize w/ any symmetry group. In our first work, we use it to make an atlas of all stable Lennard-Jones solids
Paper: https://t.co/0m0wjn6xLm
Code: https://t.co/6v1Bk3G5LY

[Gangeya Student Chapter @GangeyaChapter]

Biophysics week 2022 celebration.
The day had exiting talks and insightful discussion.
@BiophysicalSoc
@iiserkol

[Gangeya Student Chapter @GangeyaChapter]

We are now live, your presence will be highly appreciated.

[Gangeya Student Chapter @GangeyaChapter]

Biophysics Week Celebration on 25th March 2022. Registration link: https://t.co/phdlg4kMCq
@iiserkol

[Gangeya Student Chapter @GangeyaChapter]

joining link: https://t.co/0v1ZFZSbTr