genenetwork

GeneNetwork is a free FOSS FAIR+ web service for genetics, genomics & EHR data. Precision medicine—Like GTEx but more species, realtime stats. Since Jan 1994!

[genenetwork @GeneNetwork2]

@erikgarrison Pangenome workshop and conference this coming week.

[genenetwork @GeneNetwork2]

Massive overhauls of GeneNetwork databases to improve speed and to prevent table locks during updates and edits. Now using InnoDB: https://t.co/327XzpzdDa

[genenetwork @GeneNetwork2]

Terrific presentations by @flavia_villani & @AndresGuarahino in genetics course at UTHSC on the pangenome draft paper

https://t.co/7srdy96Dr5

and paper with @erikgarrison and @v_colonna on cross-chromosome recombination in humans. Yes it happens!

https://t.co/37uOMP3woH

[Saunak Sen শৌনক সেন @[email protected] @saunaksen]

New package from our group: MetabolomicsWorkbenchAPI.jl is a Julia package to work with the Metabolomics Workbench REST service. @GeneNetwork2 @OPARProject

[genenetwork @GeneNetwork2]

Pjotr Prins, lead of GeneNetwork FOSS team headed up presentations at Tenth Anniversary of GNU Guix:

https://t.co/tFAMCoEYec

[genenetwork @GeneNetwork2]

CHALLENGE: How to keep genetic and genomic data unidentifiable but sharable?@erikgarrison @pjotrprins and @RichardMott7)are making progress toward this key challenge in individualized health care.

Pangenomes need protection too! Here is Erik’s latest

https://t.co/258jUNQP0m

[genenetwork @GeneNetwork2]

Several user interface upgrades and addition of icons to GeneNetwork’s main Search page today (25Sep2022).
Thanks to Zach Sloan.

[genenetwork @GeneNetwork2]

@sysgenschool And our four groups and their areas of focus.

Of course significant complementarity and intentional overlap.

And your own questions and tests.
@rupertoverall @KMozhui

[genenetwork @GeneNetwork2]

@sysgenschool Judea Pearl’s #Book of Why definitely worth reading if you are interested in causal modeling and the synthesis @rupertoverall mentioned in presentation. And lots of genetics too. Highly recommended.

https://t.co/NjkrJtkTzL

[genenetwork @GeneNetwork2]

GeneNetwork is working beautifully at Day 1 of @SysGenSchool
More intense use coming soon.

[genenetwork @GeneNetwork2]

@rupertoverall GeneNetwork holding up well @SysGenSchool

[Vivek Kumar @Vivekdna]

We develop a method for high-throughput frailty assessment using machine vision is out @NatureAging. We worked with Gary Churchill and @NathanShockCtrs This tech will enable scalable and objective aging studies. Detailed tweet to follow. https://t.co/UOS79KDbQ7

[genenetwork @GeneNetwork2]

Rupert highlighting boolean networks for ageing and metabolism @sysgenschool
He is using Minerva for this work. We will be test driving this week.

[Stephanie Hicks, PhD @stephaniehicks]

plot your data.
plot your data.
plot your data.
plot your data.
plot your data.

[genenetwork @GeneNetwork2]

Cool resources for @sysgenschool from Rupert Overall are here:

https://t.co/HDRCyrIBxQ

[genenetwork @GeneNetwork2]

Cool resources for @sysgenschool from Rupert Overall are here:

https://t.co/HDRCyrr0Gi

[genenetwork @GeneNetwork2]

Great Hacker News thread on user interface design and optimization. It hard and a community effort—

https://t.co/AlPrHVcgYv

[genenetwork @GeneNetwork2]

Hey GN coding team— to say but correlations are running VERY SLOWLY today, even against BXD phenotypes. What gives? Took 262 seconds. Is one process competing with another?

[genenetwork @GeneNetwork2]

Worth following Albert Rapp @rappa753 . Code we might use for improved GUIs.

[Albert Rapp @rappa753]

I am rebuilding my #rstats blog from the bottom up with #quarto. This will let me use quarto's cool new tricks like tabs and easy columns.

I've already spent hours using quarto's great docs to build a custom blog. If you want to do the same, let me show you what I did.

[genenetwork @GeneNetwork2]

And more summaries from Verónica.

[Dr. Verónica Espinoza @Verukita1]

1.-https://t.co/Rmobkd1Cwu
2.-https://t.co/8a34zK6coC
3.-https://t.co/6Vc4BvtCM1
4.-https://t.co/QWjcJWWWhz
5.-https://t.co/yps2Azbq18
6.-https://t.co/v1Fq4hdzWS
7.-https://t.co/A2OvyppgUM
8.-https://t.co/tHA40c1rWs
9.-https://t.co/hQtkzGxpCN