Guilhem ROYER

[Guilhem ROYER @GuilhemRoyer]

Metabolic signatures of extraintestinal pathogenic E. coli
Using a pangenome-based approach combined with metabolic pathway predictions, we investigated metabolic features associated with both lifestyle and phylogenetic background
https://t.co/KUZfAG5Auy
@vallenet @IAME_Center

[Fourati Slim @fourati_slim]

Check out our new paper on molecular characterization of RSV infections in elderly patients during the 2023/2024 season in the era of nirsevimab introduction, just published in JID https://t.co/Ljoh9iOYgi

[bioRxiv Bioinfo @biorxiv_bioinfo]

CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data https://t.co/RdhiT2HuxE #biorxiv_bioinfo

[Oliver Schwengers 🇩🇪🇪🇺🇺🇦 @oschwengers1]

Excited to share BakRep - our latest work published in @MicrobioSoc #MGen

>661,000 bacterial genomes, uniformly characterized & annotated, enriched with metadata, accessible via a flexible search engine

https://t.co/UKGlI6xUAV

👇 1/7

[Guillaume GAUTREAU @GUILLAUMEGAUTRE]

Je propose une offre de stage à @INRAE_MaIAGE pour modéliser les interactions microbiennes et métaboliques dans la dynamique de fermentation de jus de légumes
Plus d'information : https://t.co/o0cRfrN8uZ

[Guillaume GAUTREAU @GUILLAUMEGAUTRE]

Mon premier article en droit de la santé est maintenant en ligne!

Face à un divulgiciel, faut-il ou non payer la rançon pour sécuriser les données personnelles des patients ?

Je discute du cadre juridique à prendre en compte pour répondre à l'attaque.

https://t.co/pX4cZNGV00

[Judit Burgaya @juditburgaya]

New preprint now online 🥳
We have developed a pipeline to perform bacterial GWAS from a set of assemblies and annotations, with one or multiple phenotypes as targets.

[Imane El Meouche @elmeouche1]

Please Retweet and/or consider joining our unit @IAME_Center !
Do not hesitate to contact us if you need information about the application and selection process.

[Guilhem ROYER @GuilhemRoyer]

@DrKatHolt If we look at the ECOFFs provided by EUCAST, we see a shift in MICs for fosfomycin in K. pneumoniae compared with E. coli, for example. At the very least, this suggests a reduction in sensitivity in this species. Perhaps low-level and high-level resistance should be considered?

[François Blanquart @FrancoisJB]

We are hiring a postdoctoral researcher in bacterial genomics to study commensal E. coli epidemiology and evolution in an ERC-funded project. Please retweet!

[David Vallenet @vallenet]

@axbazin If you would like to contribute to the development of PPanGGOLiN as an engineer, post-doc or PhD student contact me by DM. Several positions will be open shortly @GenoLabgem

[Adelme Bazin @axbazin]

After a year of development, PPanGGOLiN 2.0.0 is now out in the wild !! https://t.co/mdkkaqdIQa
Its major new features include a way to integrate any annotation from any tool in the graph, an improved data structure to store your pangenomes, and a brand new documentation !

[Laurence Armand-Lefevre @Laurence_Armand]

De l'ordre et du désordre ! Le Pr Erick Denamur nous raconte l'histoire évolutive d'Escherichia coli. Magnifique conférence introductive #RICAI 2023. @IAME_Center

[Traduisons Les @TraduisonsLes]

"S'il faut supprimer tous les droits des français pour les protéger, je n'hésiterais pas UNE seconde !"

[Guilhem ROYER @GuilhemRoyer]

@GenoLabgem @axbazin @GUILLAUMEGAUTRE @jpjarnoux @CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo 👏👏👏

[LABGeM @genolabgem.bsky.social @GenoLabgem]

Today @GenoLabgem is going to a special event with the PPanGGoLiN team @axbazin @GUILLAUMEGAUTRE @jpjarnoux #pangenome

@CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo

[LABGeM @genolabgem.bsky.social @GenoLabgem]

PPanGGOLiN is nominated for the prize « Science ouverte du logiciel libre de la recherche »

@GUILLAUMEGAUTRE @axbazin @jpjarnoux @j_main_guy @vallenet et Alexandra Calteau

@CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo

[LABGeM @genolabgem.bsky.social @GenoLabgem]

We're offering an internship to work on new methods for microbial #pangenomics. https://t.co/454ZeDpDex

Come and work with us!

[Marco Galardini @mgalactus]

Our manuscript describing our tool panfeed has now been published in Microbial Genomics (@MicrobioSoc): https://t.co/BFkC17cyIP

Head over to our lab website for a quick explainer: https://t.co/8VAStOw3fw