Alexis Lucattini

Bioinformatician at University of Melbourne Center for Cancer Research. All tweets are my own.

[Alexis Lucattini @Lexisomes]

@delagoya @BioContainers And now this registry has been deleted? Where was the announcement on this??

[Dr. Sehrish Kanwal @Dr_Sehrish_K]

As part of the Common Workflow Language (CWL) conference this year , @Lexisomes and I'll be conducting a CWL novice tutorial training workshop (APAC region) next week. Register below if you're interested and/or please retweet.
Workshop Signup: https://t.co/pmP1hNOZDJ
@commonwl

[Alexis Lucattini @Lexisomes]

Not too late to sign up for CWLConf 2023!

https://t.co/nhbkbtVbMj

I'll be in Session 2 (EMEA-APAC) Wed 1 March and Session 3 (APAC-Americas) Friday 3 March.

Learn how we're using CWL Expressions at @UMCCR for running workflows on @illumina's Connected Analytics Platform.

[Alexis Lucattini @Lexisomes]

. @bitly I want to update the destination URL to ONE of my links. I use this service about one per year. How do I do this without paying $96?

[Common Workflow Language project @commonwl]

"Writing Advanced CWL JS Expressions in TypeScript"

Presenter: Alexis Lucattini @Lexisomes (University of Melbourne Centre for Cancer Research)
https://t.co/Y2Qhv1PYMb

[MultiQC @MultiQC]

New release! @MultiQC version 1.14 just hit the shelves, and it's a big one! 🎉 Massive thank you to everyone who contributed (there were a lot of you!) 🙇🏻‍♂️

https://t.co/U4C9HrYH9V

Here's a short thread covering some of the highlights.. 🧵

[Alexis Lucattini @Lexisomes]

🎵 It's going down (it's going down) 🎵 I'm yellin' Twitter!

[Alexis Lucattini @Lexisomes]

@elonmusk ...which in other words is

[Alexis Lucattini @Lexisomes]

@rougeneuron @2daeeun @LinuxHandbook Not if you do what all the cool kids are doing these days which is "alias rm='sudo rm'"

[Alexis Lucattini @Lexisomes]

@multimeric @github Thanks, that's actually super useful!

[Alexis Lucattini @Lexisomes]

Is it possible to delay the submission of a @GitHub issue until 9am the next business day to make it look like the submitter has a healthy work-life balance? ...asking for a friend

I also think this would be a useful feature for reducing notifications outside of business hours.

[Alexis Lucattini @Lexisomes]

@StevePriceMedia @AusTodayListnr In the context of Andrew Thornburn:

'Should your private religious beliefs affect your employment?'

Wasn't private, he was on the board of the church.

'Should your prospective employer be able to ask you about your religious beliefs?'

Didn't have to. It was on his LinkedIn

[Alexis Lucattini @Lexisomes]

@PhilippBayer Rise of container software, docker and the HPC friendly singularity and the automation of bioinformatics software being added as stand-alone images to container repositories like https://t.co/d4FzRx8DO8 has also been a big help! I can pull an image down locally and just run it!

[Alexis Lucattini @Lexisomes]

@patricklmead Hi Patrick, can you send me through a gist of your code so I can reproduce this? What ruamel method are you using to read the yaml file? And what version of ruamel are you using?

[Alexis Lucattini @Lexisomes]

A write up on writing up yaml files in python:

https://t.co/9f1J0zeXaq

[Alexis Lucattini @Lexisomes]

@flaviaerius Reason I ask is, cos in python, this is an issue with pandas dataframes if inplace=True is used instead of a reassignment

[Alexis Lucattini @Lexisomes]

@flaviaerius Is there any caveats to this way as opposed to mtcars <- mtcars %>% mutate

Say you had mtcars as an input param for a function, could the %<>% affect the value of mtcars variable in the global scope?

[Alexis Lucattini @Lexisomes]

@DRobertBailey @LaTrioli @VictorianCHO @MaryAnneThomas https://t.co/lpu4sbBcLA

[Alexis Lucattini @Lexisomes]

Why does Outlook send me reminders for meetings that happened a week ago? I clearly attended, I clicked the meeting link through the Outlook calendar at the time of said meeting, and you can't track that? And if I didn't go... no good can come from following up now!

[Alexis Lucattini @Lexisomes]

@PRGuy17 For those interested, the pandemic powers were extended - https://t.co/RPaGLBM0dh.

These replace the SoE powers that were designed for short-term events, not pandemics. Guy spent a long time advocating against pandemic powers only to clearly forget they existed.

[Alexis Lucattini @Lexisomes]

@Psy_Fer_ @chrisnrg WSL2 integrates pretty well with the X11 software too (with some tinkering), so Linux GUI apps should be compatible with Windows too