Lydie Lane

Associate group leader at #SIB #UniGe
#bioinformatics #neXtProt #SPARQL #proteomics #HPP
Organizer of #classical #music events (concerts and workshops)

[neXtProt @neXtProt_news]

Happy that the neXtProt set of manually curated function predictions for 239 uncharacterized proteins could be used to evaluate DeepGO-SE, a new powerful AI-based protein function predictor developed by @coolmaksat at KAUST!
Full story here: https://t.co/xAa1Ec8uE9……
@ISBSIB

[neXtProt @neXtProt_news]

Chi-Biotech and neXtProt joined their forces and are happy to deliver a mirror site of neXtProt in China, https://t.co/rMuaAm0ZrP, which should considerably improve the usability of neXtProt for all our users located in China and other Asian countries! @ISBSIB @hupo_org

[neXtProt @neXtProt_news]

How can Next Generation Proteomics help us predict the functions of the ~1500 human genes that remain totally uncharacterized?
Happy to exchange ideas with #BSPREUPA2023 attendees tomorrow at poster 146 !
@ISBSIB @hupo_org @EuPAProteomics

[Marvin Martens @mmarvinm2]

Poster presented at @imig2023 on the molecular pathway of Pleural Mesotelioma in @WikiPathways, constructed by the community! The poster shows uses of the pathway for omics data interpretation, and integration with other databases such as @neXtProt_news . https://t.co/ObizoS6GUd

[neXtProt @neXtProt_news]

The Proceedings of SWAT4HCLS2023 have just been published! Our Data in use paper (https://t.co/4QcWzcQfnh) describes query NXQ_00300, that highlights 44 uncharacterized human proteins potentially involved in brain function than can be studied in Drosophila melanogaster!

[neXtProt @neXtProt_news]

Many thanks to the organizers for this great opportunity to exchange fresh ideas on how to better characterize the human proteome in the frame of in the HPP Grand challenge!
@CharlesPineau @fjcoriz @hupo_org

[neXtProt @neXtProt_news]

New release 2023-04-18 with > 3.75 million MS/MS peptides from PeptideAtlas and MassIVE ! @ISBSIB @hupo_org https://t.co/g0Qisv8Lb9

[Lydie Lane @lydie_lane]

How can we use SPARQL to help deciphering the functions of the ~1500 human genes that remain uncharacterized? Happy to exchange ideas at my poster U-2 at #SWAT4LS 2023 Basel ! @hupo_org @ISBSIB @SWAT4HCLS

[neXtProt @neXtProt_news]

Want to know more about missing, uncharacterized, novel, or disease-related human proteins? Have a look at the 2022 Report on the Human Proteome from the Human Proteome Project @hupo_org !
https://t.co/flUnMTWLN9

[EuBIC-MS @EuBIC_ms]

One week left until the registration deadline for the #EuBIC2023 Developers Meeting, and only a few spots are left!
Were you holding out of registering until the hackathon projects were selected? Good news! Take a look at the final list on https://t.co/0zl5QN8OT5, and register 😉

[Lydie Lane @lydie_lane]

Very proud of this huge effort of the @neXtProt_news team @ISBSIB to revisit every component of the #RDF model! https://t.co/k7ztRcmMl4

[neXtProt @neXtProt_news]

Do you SPARQL? The RDF model for the human protein data in neXtProt has been completely revised.
#SemanticWeb #KnowledgeGraphs

See https://t.co/0Sf1wg9yp6

[Lydie Lane @lydie_lane]

Super happy to deliver a keynote about the dark human proteome at #CASSS #MassSpec2022 in Long Beach, CA! Looking forward to discussions & fresh ideas on how to tackle the understudied human proteins from an amazing audience from both industry & academia!
https://t.co/b8nwSwCLng

[neXtProt @neXtProt_news]

At neXtProt we are manually mining the scientific literature to predict function.

Let’s join forces to complete the human functional proteome!
@hupo_org @ISBSIB @biocurator @GoogleAI @mjmfreijnders @tuncadogan @iddux

[Lydie Lane @lydie_lane]

Want to know if your proteins of interest have already been observed by MS? use neXtProt SPARQL! For a nice example, see here: https://t.co/dGCG3LFZ3O @neXtProt_news

[neXtProt @neXtProt_news]

Nice use of neXtProt SPARQL to retrieve human brain proteins identified by MS with 2 distinct peptides by @UNIGEnews @Hopitaux_unige researchers

[neXtProt @neXtProt_news]

Thanks to the undergraduate students in biomedical sciences @UNIGEnews @lydie_lane, 80 entries now have function predictions - that's a big step forward! @hupo_org

[neXtProt @neXtProt_news]

Looking forward to the DSDMap project with @bigcat_UM @LMU_Muenchen @FundacionDravet on #DravetSyndrome - more at https://t.co/kYmiNLBimJ

[CompOmics @compomics]

@EuPAProteomics is hosting an online job fair on at its ECR day on 28 June, which will feature three highly interesting employers. Today we announce @PreOmics, the others to come in next days! Register for the free ECR day here: https://t.co/Xrt57Hs3Ab

[Young Proteomics Investigators Club @EU_YPIC]

1 week left to submit your contribution to the 1st European #proteomics science slam - prizes for the best 3 videos 🥳

[Lydie Lane @lydie_lane]

Happy to join the 25th C-HPP workshop tomorrow in Vilamoura, looking forward to discuss how neXtProt can contribute to the HPP Grand project ! @hupo_org @neXtProt_news

[neXtProt @neXtProt_news]

neXtProt’ s @lydie_lane will be reporting on progress in completing the Human Proteome at the C-HPP Workshop @EuPAProteomics @hupo_org

[Lydie Lane @lydie_lane]

@pastramimachine Integration of results from different tools will probably be key! We've tried this approach @nextprot_news for a number of human proteins of unknown function, maybe that could help? If you launch a challenge, we'd be happy to take part! https://t.co/HmQqFS4Ggh