neXtProt

The innovative human proteins-centric knowledge platform

[neXtProt @neXtProt_news]

Ensuring the Future of neXtProt: Your ideas matter!
Due to funding issues, neXtProt will cease operations by year-end. We are exploring new ways to repurpose or relocate its valuable components and need your creative ideas. Feel free to contact us! @ISBSIB @biocurator @SWAT4HCLS

[neXtProt @neXtProt_news]

Happy that the neXtProt set of manually curated function predictions for 239 uncharacterized proteins could be used to evaluate DeepGO-SE, a new powerful AI-based protein function predictor developed by @coolmaksat at KAUST!
Full story here: https://t.co/xAa1Ec8uE9……
@ISBSIB

[neXtProt @neXtProt_news]

Two weeks ago, I had the pleasure to present the neXtProt Function prediction project at #HUPO2023. Since then, predictions were added for 12 proteins. Now, 244/1521 uncharacterized proteins have hypotheses! https://t.co/qkJmgTS0j1
@hupo_org @ISBSIB @biocurator @CharlesPineau

[SIB @ISBSIB]

Don't miss the farewell lecture of SIB co-founder and Group Leader, Amos Bairoch (@calipho2) at @unige_en on 28 September in which he will share insights from his remarkable career spanning 4 decades!

👉https://t.co/WWLL7mBikR #bioinformatics

[neXtProt @neXtProt_news]

Happy to be at #HUPO2023 in Busan and discuss the last HPP metrics at the #BioinformaticsHub !

[neXtProt @neXtProt_news]

New release 2023-09-11 with updated subcellular localization and expression data from HPA version 23 !
@ISBSIB @hupo_org @ProteinAtlas
https://t.co/Ssu97gwQQD

[neXtProt @neXtProt_news]

The #VEP tool is now up-to-date with PolyPhen-2 and SIFT scores from @ensembl release 109 ! @ISBSIB https://t.co/lwYFXeviFW

[neXtProt @neXtProt_news]

Happy that neXtProt and its associated set of 140 SPARQL query examples could be used as benchmarks for this nice study on interoperability between biological and chemical databases ! @ELIXIRCZ @ISBSIB

[Jakub Galgonek @JGalgonek]

As a member of @ELIXIRCZ, we would like to introduce you to our new review on making relational databases accessible via #SPARQL.

https://t.co/isGAqEF4ex

[neXtProt @neXtProt_news]

Chi-Biotech and neXtProt joined their forces and are happy to deliver a mirror site of neXtProt in China, https://t.co/rMuaAm0ZrP, which should considerably improve the usability of neXtProt for all our users located in China and other Asian countries! @ISBSIB @hupo_org

[neXtProt @neXtProt_news]

How can Next Generation Proteomics help us predict the functions of the ~1500 human genes that remain totally uncharacterized?
Happy to exchange ideas with #BSPREUPA2023 attendees tomorrow at poster 146 !
@ISBSIB @hupo_org @EuPAProteomics

[SIB @ISBSIB]

Congratulations to SIB’s @PascaleGaudet, recipient of the International Society for #Biocuration’s “Exceptional contribution to biocuration” award.

A fantastic recognition of her work (incl. on @nextprot_news @news4go) and #Swiss excellence in the field:
https://t.co/KqMIjfXQv2

[Marvin Martens @mmarvinm2]

Poster presented at @imig2023 on the molecular pathway of Pleural Mesotelioma in @WikiPathways, constructed by the community! The poster shows uses of the pathway for omics data interpretation, and integration with other databases such as @neXtProt_news . https://t.co/ObizoS6GUd

[neXtProt @neXtProt_news]

The Proceedings of SWAT4HCLS2023 have just been published! Our Data in use paper (https://t.co/4QcWzcQfnh) describes query NXQ_00300, that highlights 44 uncharacterized human proteins potentially involved in brain function than can be studied in Drosophila melanogaster!

[neXtProt @neXtProt_news]

Many thanks to the organizers for this great opportunity to exchange fresh ideas on how to better characterize the human proteome in the frame of in the HPP Grand challenge!
@CharlesPineau @fjcoriz @hupo_org

[neXtProt @neXtProt_news]

Two years ago, neXtProt launched the community function prediction pages for uncharacterized proteins.
Now, 239 entries have hypotheses.
Check them out and help us reach the 500 entry mark!
https://t.co/5syD62HTah
@hupo_org @ISBSIB @biocurator @coolmaksat
@tuncadogan

[neXtProt @neXtProt_news]

Did you know that about 1 in 4 neXtProt entries (5415 in total) are associated with a disease?
98 disease-associated proteins are encoded on chromosome 13. Find out how many are on your favorite chromosome using this SPARQL query: https://t.co/d5RTC5tEjv
@hupo_org

[neXtProt @neXtProt_news]

Retrieve the 17453 PE1 entries that comply with the @hupo_org HPP data interpretation guidelines 3.0 in less than one second using our new SPARQL query https://t.co/T4O4rCCXo9

[neXtProt @neXtProt_news]

New release 2023-04-18 with > 3.75 million MS/MS peptides from PeptideAtlas and MassIVE ! @ISBSIB @hupo_org https://t.co/g0Qisv8Lb9

[neXtProt @neXtProt_news]

Check out Poster 12 @LS2Switzerland and talk to Paula Duek about the #neXtProt function prediction project for uncharacterized human proteins, and how to contribute! @ISBSIB @hupo_org

[neXtProt @neXtProt_news]

@lydie_lane @hupo_org @ISBSIB @SWAT4HCLS NXQ_00300 at https://t.co/ql5rHQwqBI federates #neXtProt and #OrthoDB to retrieve 44 uncharacterized proteins that may be important for brain functions and are conserved in fruit fly. #Drosophila researchers & curators, we may need your help! @flybase @ISBSIB @hupo_org