Mark Gerstein

#Bioinformatics professor, interested in #DataScience, with photography, triathlons & books as hobbies

[Mark Gerstein @MarkGerstein]

Posting my talk tomorrow at @NYIT on ML in Biomedicine https://t.co/61TFdwbrLw Lots of new slides on amortizing slow physical calculations into ML models (from @_YunyangLI) & using quantum computing for privacy

[Steven Kleinstein 🖥 @skleinstein]

Interested to learn about Yale’s #PhD program in Computational Biology and Biomedical Informatics (CBB)? Join our virtual information session for interested applicants on Tuesday, November 10, 2026, 8–9PM ET.

👉Register at: https://t.co/h0jZii6Tj6

@YaleCBB
@YALEBBS

[Dingyao Zhang @dingyao_zhang]

Where did a mutant cell come from, and where did it go?

1/ Our new manuscript StarTrak (https://t.co/GYsTOMDdOu) enables somatic variant calling + lineage reconstruction at single-pixel resolution in spatial genomics. It iterates between the two, using multimodal deep learning on spatial, histology and expression data. 🧵

[Mark Gerstein @MarkGerstein]

Posting my talk tomorrow at MoML 2026 at @MIT (organized by @AIHealthMIT https://t.co/LKnt6bApyw New slides on World Modeling for drug dev. & its integration with @daifengwang's drug repurposing

[Steven Kleinstein 🖥 @skleinstein]

Interested to learn about Yale’s #PhD program in Computational Biology and Biomedical Informatics (CBB)? Join our virtual information session for interested applicants on Monday, October 19, 2026, 8–9PM ET.

👉Register at: https://t.co/uQ4apsxp4R

@YaleCBB
@YALEBBS

[The Nobel Prize @NobelPrize]

BREAKING NEWS
The 2026 #NobelPrize in Physiology or Medicine has been awarded to Karl Deisseroth, Peter Hegemann and Georg Nagel “for their discoveries concerning light-gated ion channels and optogenetics.”

[The Nobel Prize @NobelPrize]

BREAKING NEWS
The Royal Swedish Academy of Sciences has decided to award the 2026 #NobelPrize in Chemistry to Henri B. Kagan and Kenso Soai “for the discovery of non-linear effects and autocatalysis in asymmetric organic synthesis.”

[Gerstein Lab | Yale @GersteinLab]

New paper in Protein Science! Meet DreamFold: a World Model that generates protein folding pathways and reveals druggable intermediate states: https://t.co/KYzIMjFMUH

[Mark Gerstein @MarkGerstein]

@hmkyale @JACCJournals Makes sense!

[The Nobel Prize @NobelPrize]

BREAKING NEWS
The Royal Swedish Academy of Sciences has decided to award the 2026 #NobelPrize in Physics to Francis Halzen “for decisive contributions to the IceCube Neutrino Observatory and the discovery of high-energy neutrinos of astrophysical origin.”

[Mark Gerstein @MarkGerstein]

@M_Decoherence @QWCevent thx - I do agree about looking at multiple, noisy runs.

[Mark Gerstein @MarkGerstein]

Posting a short talk tomorrow for the #QuantumWorldCongress on using Quantum Computing to achieve Biomedical Privacy https://t.co/ruULXKWQyi #QWC2026 @QWCevent

[Mark Gerstein @MarkGerstein]

@M_Decoherence @QWCevent sure - gr8 suggestion.... We'll post when we've tried this.

[MIT Jameel Clinic for AI & Health @AIHealthMIT]

We're excited to hear from @YaleMed's @MarkGerstein on Wednesday, Oct. 14 for #MoML2026! <20 tickets left!
🎟️ Register now before tickets are sold out: https://t.co/lzl4hTohHY

[Mark Gerstein @MarkGerstein]

@M_Decoherence @QWCevent Thanks for your careful thoughts. We'll try to do this!

[Mark Gerstein @MarkGerstein]

@M_Decoherence @QWCevent Good pt. Let me look into this!

[Mark Gerstein @MarkGerstein]

@M_Decoherence @QWCevent This is a good point. You can plot this as a utility v privacy graph, which is in the paper & slides (see the last one). Sorry it took me so long to respond. For some reason, I didn't see this show up in my Twitter notifications.

[Yale MB&B @YaleMBB]

We are excited to announce a tenure-track faculty position in Computational Biophysics and Biochemistry, exploring the intricate molecular and cellular processes and the complex interactions of their macromolecular components!

Apply now at https://t.co/xrvhzNs9GV.

[Mark Gerstein @MarkGerstein]

@daifengwang @panos_roussos @NatureMedicine congrats!

[Daifeng Wang @daifengwang]

Our AI framework PASCode w/@panos_roussos @NatureMedicine uses graph neural networks to score phenotypic association of >6M cells #PsychAD and discover unknown cell subtypes & genes in #Alzheimers for pathology, cognitive resilience & psychiatric symptoms https://t.co/HuJXqML9e0

[Mark Gerstein @MarkGerstein]

@M_Decoherence @QWCevent Good point about noise. The threat model is on slide 7. Basically, two parties sharing data with a data analysis center don't want to share individual-level information with each other or with the data center. Instead, they can share composite states. #QWC26