Matt Cannon

Senior bioinformatics scientist at Nationwide Childrens Hospital. Using bioinformatics, and high-throughput sequencing to facilitate pediatric cancer research.

[KIERAN TEBBEN @TebbenKieran]

Excited to finally share the last chapter of my thesis from @SerreLab - Immune gene expression changes more during a malaria transmission season than between consecutive seasons | Microbiology Spectrum https://t.co/Ujtx5x7T9u

[Megan Fritz @MosquitoDoc]

The Fritz Lab is hiring! Looking for a postdoc project lead to investigate the role of structural variants in evolution on short time scales. Please circulate!

[Genevieve Kendall, Ph.D. @KendallLabNCH]

Really proud of these two papers led by @JackKucinski and Lex Tallan / collaborative work with my and Ben Stanton’s lab. We wanted to know how PAX3::FOXO1 interfaces with #chromatin in vivo and developed a new #zebrafish model and analytical pipeline to do so. #TeamFishAndChIPs

[Genevieve Kendall, Ph.D. @KendallLabNCH]

New review from my group led by graduate students, @JackKucinski and Delia Calderon. Hope you enjoy!

Biological and therapeutic insights from animal modeling of fusion-driven pediatric soft tissue sarcomas https://t.co/ftrHww8xHk

And a great experience working w/ @DMM_Journal.

[🇲🇽 Leonardo Collado-Torres @lcolladotor]

Ruben Dries @RnDries gave a great talk about #Giotto Suite which provides a great framework for analyzing spatial 🖼️ transcriptomics data

Preprint 🗞️
https://t.co/IX0QuL1l9n

They are hosting a free workshop August 5-7, 2024. Sign up below 👇🏽
https://t.co/WyGPO9OrOH

#FOGBoston

[Matt Cannon @MattVCannon1]

@TebbenKieran Congrats!!!!

[Johanna Holm @symbiologyst]

Finally read to share!:
SpeciateIT and vSpeciateDB: Novel, fast and accurate per sequence 16S rRNA gene taxonomic classification of vaginal microbiota https://t.co/ghJXlPVg39

@jacquesravel @GenomeScience #vaginalmicrobiota #microbiota #16srRNAgene

[Ann Gregory, PhD @gregory_annc]

I am recruiting a bioinformatics postdoc for developing bioinformatic pipelines for viral discovery and viromics to start in the Fall 2024.

Please check out the job posting here: https://t.co/GGajRuPmxU

https://t.co/rBRxFX0A19

[Genevieve Kendall, Ph.D. @KendallLabNCH]

The Kendall Lab is at #AACR24! Check out our poster presented by Ph.D student Jack Kucinski in the #Pediatric Cancer Genomics and Epigenomics session. Excited to see you all soon!

[KIERAN TEBBEN @TebbenKieran]

Excited to finally share our work on how gene expression during #malaria changes with different #host and #parasite parameters. @SerreLab

https://t.co/VCygdl1vMd

[Genevieve Kendall, Ph.D. @KendallLabNCH]

Congratulations to Katie Silvius from my group for developing this protocol to make our tp53M214K mutant #zebrafish genotyping more efficient. We hope you find it useful!

A Robust Closed-Tube Method for Resolving tp53M214K Genotypes | Zebrafish https://t.co/sIJChzLJTm

[Genevieve Kendall, Ph.D. @KendallLabNCH]

🗣We are hiring a Research Assistant to join our team. We study the developmental biology of pediatric #sarcoma using a cross-species comparative oncology approach (of course including #zebrafish). More info about the position and lab 👇

https://t.co/xaiukJEKqO

[Sachie-Kanatani @KanataniSachie]

Excited to share the latest publication!!
https://t.co/InXayHyiEp

[Rahul Satija @satijalab]

Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out my lab's eighth annual Single Cell Genomics Day on March 29. Keynotes from @IdoAmitLab @JD_Buenrostro and Xiaowei Zhuang. Please RT/spread the word! https://t.co/zG98gkckMU

[Matt Cannon @MattVCannon1]

Just to share, I'm leading an intro to python workshop here at NCH, and made these to hand out to the people who complete it. Thought it was a fun design. I designed the base with #Fusion360 and grabbed the python from #thingiverse.

[Matt Cannon @MattVCannon1]

@davisidarta @humancellatlas I may have also missed a key point

[Matt Cannon @MattVCannon1]

@davisidarta @humancellatlas A ? so I understand. Are you defining the covariance by summing the % explained by all PCs? It would make sense that using fewer genes would mean a higher % expl. If you had 2 genes it would explain 100%. But that's not fair since you're not expl. the var. in the entire dataset.

[Matt Cannon @MattVCannon1]

Today is the last day of my intro to R workshop, so time to hand these out I suppose. 🤣

[NCBI @NCBI]

Important update! NCBI Datasets will gradually replace the legacy Genome and Assembly resources, which will no longer be available by May 2024. Learn more: https://t.co/MdPnbLbAFi #NCBICGR