Merrit Romeike

PostDoc with @VallierLab

[Max Perutz Labs Vienna @MaxPerutzLabs]

What comes to mind when our #PerutzAlumni think of their time at the Perutz? 💭

For @MerritRomeike, who completed her PhD in the lab of @chribue in 2022, it's all about the supportive community 🎓✨ Watch her share her thoughts and discover what she’s up to now! #AlumniStory

[GrazianoMartello @grazianone]

Excited to share our manuscript about IGNITE (Inference of Gene Networks using Inverse kinetic Theory and Experiments) – a machine learning framework that infers Gene Regulatory Networks (GRNs) from unperturbed single-cell RNA sequencing data and predicts gene perturbations!
🧵

[ludovic vallier @VallierLab]

@VallierLab is recruiting a technical assistant for 12 months. Good springboard for a future PhD.

Only few days to apply!

https://t.co/8hqecjH0ui

[Irene Talon @IreneTalon]

🚨Interested in human development, organoids and pluripotent stem cells? Our lab - @VallierLab - is looking for a PhD student through the IMPRS graduate program to work with us at the fantastic @MPI_MolGen in Berlin! Apply by Jan 5th, 2024! Amazing science & supervision!👇

[bioRxiv @biorxivpreprint]

The asynchrony in the exit from naive pluripotency cannot be explained by differences in the cell cycle phase https://t.co/u7PI6S8lfL #bioRxiv

[Mark Hartmann @mp_hartmann]

We are looking for a highly motivated #PhD candidate to analyse #circulatingtumorcells in #colorectalcancer applying #singlecell #multiomics analyses at the #dkfz in beautiful #heidelberg

[Merrit Romeike @MerritRomeike]

I have this new piece of decoration! And I am very grateful for all the people involved, especially @chribue for the best mentoring imaginable.

[Merrit Romeike @MerritRomeike]

@AnnaSchmuecker @chribue Thank you!

[Merrit Romeike @MerritRomeike]

@laura__sa Thank you !

[Merrit Romeike @MerritRomeike]

Happy to share the final version of a big part of my PhD work !

[Max Perutz Labs Vienna @MaxPerutzLabs]

How do stem cells fight against viral infections? In @emboreports the @chribue lab with @MerritRomeike show that the gene network regulating the pluripotent cell state directly controls Irf1, a key gene of the innate immune response. Read more: https://t.co/UnEIGn8aj4 @univienna

[Merrit Romeike @MerritRomeike]

@chribue We also lovingly called it arc de triomphe!

[Merrit Romeike @MerritRomeike]

cleaning up at the end of your PhD:

[Merrit Romeike @MerritRomeike]

@Sc_Ninjas Any tips on how to quantify cell to cell variability within one cluster? Similar to what Kolodziejczyk et al (2015) did with CV^2 and a running median, but I wonder if there are more specialised approaches. Thanks!

[IMBA imbavienna.bsky.social @IMBA_Vienna]

#SYStem2022 session 6: "#cellidentity & #cellfate decisions" with talks by

Sven Falk (@UniFAU), Tom Wyatt (@SCICambridge), @MoritzMall (@DKFZ), @AntoineZalc (@InstitutCochin), @IreneTalon (@KU_Leuven) as well as @MerritRomeike from our neighboring @MaxPerutzLabs (@chribue lab)!

[Merrit Romeike @MerritRomeike]

Thanks to everybody who was involved in this work and made my PhD time so enjoyable! 8/8

[Merrit Romeike @MerritRomeike]

I am very excited to share part of my PhD work with Christa Buecker @chribue at the @MaxPerutzLabs: Stem cell specific interferon stimulated gene expression is regulated by the formative pluripotency network through IRF1 https://t.co/3wOIh7xjvL 1/8

[Merrit Romeike @MerritRomeike]

The same transcription factors that are establishing formative pluripotency also control expression of antiviral genes through Irf1 and thereby keep the cell state intact and safe. 7/8