GenomeMining

Interested in #genomics #bioinformatics #plants #metabolism

[GenomeMining @MiningGenome]

FrustraMPNN: tool for proteome-scale analysis of deep mutational single-residue local energetic frustration in proteins
https://t.co/RcCfOxgIgW

NAVIP: Unraveling the Influence of Neighboring Small Sequence Variants on Functional Impact Prediction
https://t.co/UdIXpLJr4J

[GenomeMining @MiningGenome]

JanusX: an integrated and high-performance platform for scalable genome-wide association studies and genomic selection
https://t.co/Piab65wMs2

Genomic characterization of a nematode tolerance locus in sugar beet
https://t.co/GCLlQubHjf

[GenomeMining @MiningGenome]

Rare shell colours in bivalves reveal multiple evolutionary pathways to blue and green colouration
https://t.co/lKLHTxOakY

Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae
https://t.co/NeRbYV01jX

#Evolution #Genomics

[GenomeMining @MiningGenome]

FastSpeciesTree: Fast and Scalable Species tree Inference
https://t.co/1IoEKgXVRO

Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae
https://t.co/NeRbYV01jX

[GenomeMining @MiningGenome]

Phased genome assembly reveals post-allopolyploidization subgenomic diversification of tobacco centromeres
https://t.co/RWvps1r19I

Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana
https://t.co/EGSdX3zYIe

[GenomeMining @MiningGenome]

Pangenome Analysis of Pyrus Reveals Potential Role of Transcription Factors in Recent Adaptation to Arid Environments
https://t.co/iS7cJBjdyb

Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet
https://t.co/xNIhiVfR0u

[GenomeMining @MiningGenome]

On the correctness of gene tree tagging and the consistency of ASTRAL-pro under a unified model of gene duplication, loss, and coalescence
https://t.co/I0i7pYLaaF

DupyliCate - mining, classifying, and characterizing gene duplications
https://t.co/5SSgazILXW

[GenomeMining @MiningGenome]

Pangenome analysis reveals the evolutionary dynamics of repeat-based holocentromeres
https://t.co/WsyMCdN4s2

Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet
https://t.co/xNIhiVgoQ2

#Genomics #Bioinformatics

[GenomeMining @MiningGenome]

A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula)
https://t.co/83rkhOFd1o

Automatic identification and annotation of MYB gene family members in plants
https://t.co/zl4yeOm9kD

#PlantSci

[DNA & RNA research @AndGenomics]

Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR

https://t.co/K8OXJ7teEV

#Evolution #FlavonoidBiosynthesis #PlantSciences #Bioinformatics #Genomics #SciComm #OpenScience

[GenomeMining @MiningGenome]

Conservation of non-consensus nucleotides in transcription factor binding sites
https://t.co/LaU30otmtn

Automatic identification and annotation of MYB gene family members in plants
https://t.co/zl4yeOmHab

#TranscriptionFactors #GeneExpression

[GenomeMining @MiningGenome]

Sweet signals: Using floral traits to predict nectar sugar availability
https://t.co/C1xHgZlW4g

Genome sequence of the ornamental plant Digitalis purpurea reveals the molecular basis of flower color and morphology variation
https://t.co/66tdoXCNSZ

#Genomics #Evolution #Ecology

[GenomeMining @MiningGenome]

Arabidopsis TITAN LIKE is required for U12-type intron splicing, especially for AT–AC subtypes
https://t.co/F4dOobKR8O

Animal, fungi, and plant genome sequences harbour different non-canonical splice sites
https://t.co/522VS9ur4I

#Genomics #Bioinformatics

[GenomeMining @MiningGenome]

Long-read sequencing is rewriting plant genomics! 🌱 With Oxford Nanopore & PacBio tech, even huge, complex genomes can be assembled faster and with higher quality. This paper explores progress, challenges, and what’s next 🚀🔬 https://t.co/v6wSQXLVeA #Genomics #PlantScience

[GenomeMining @MiningGenome]

HapBridge: A Methylation-Guided Approach for Correcting Switch Errors and Bridging Phased Blocks in Long-Read Phasing
https://t.co/k8gJT3X2iJ

Cookbook for Plant Genome Sequences
https://t.co/YZHSbYJzas

[GenomeMining @MiningGenome]

Diversity and ecological functions of anthocyanins
https://t.co/uiYuFBwlsh

[Steve Marek @stephenmarek2]

The molecular basis of the binding and specific activation of rhizobial NodD by flavonoids | Science https://t.co/lXQ9slamke

[Plant Physiology @PlantPhys]

ROTIS: A RUBY-assisted one-shot tissue-culture-free system for in-planta soybean transformation from germinated seedlings (Yongguang Li , Ke Lu , Shunli Feng , Ran Ning , Haiyan Li , Xue Zhao , Yubing He , Yingpeng Han) https://t.co/Ei2eeXyQqR @ASPB #PlantSci

[GenomeMining @MiningGenome]

Genome-wide & stress-responsive landscape of the Pectin methylesterase gene family in cucumber & muskmelon
https://t.co/tz10iVIbKu

Large-scale Phylogenomics Reveals Systematic Loss of Anthocyanin Biosynthesis Genes at the Family Level in Cucurbitaceae
https://t.co/NeRbYV01jX

[Agristok @agristok]

Two PhD Positions in Plant Pathology at Kiel University (CAU), Germany – Start March 2026: https://t.co/l92vD2ZRjF via @agristok