NYGCtech

@nygenome's Technology Innovation Lab : @mssanjavickovic @manimota @yougotkunal @Chao00Yan @f_cambuli @sarafedez_ @dwmckellar @cwpfautz

[NYGCtech @NYGCtech]

Check out our latest preprint in collaboration with @satijalab & @landau_lab from @nygenome describing #NTTseq, a new method for multiplexed CUT&Tag that leverages nanobodies to simply and robustly profile multiple chromatin marks in single cells. https://t.co/Fc56mAq4WC

[Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics]

Big news: The Vicković Lab’s (@NYGCtech) study on colon aging has been accepted by @NatureBiotech! The team built a detailed atlas of aging colon tissue, using spatial transcriptomics + a new tool (cSplotch) to profile ~1,500 samples & 400k nuclei.

Link: https://t.co/MjiQGVdUrY

[s. @mssanjavickovic]

Super happy to see our work on spatial host-microbial interactions out and about! Congrats to Britta and @mstrazar07 who spearheaded the work! This was one for the ages! Big thanks to @NYGCtech @Cancer_dynamics @ColumbiaBME @KAWstiftelsen @broadinstitute @UU_University @NHGRI

[NYGCtech @NYGCtech]

👋 Welcome to the @NYGCtech lab Ruiyang He! Ruiyang is a PhD student from @ColumbiaBME who will blend #computationalmethods with #spatialtranscriptomics tech to delve into spatial organization's role in development & disease. 🧬🔬 #Science #Research

[Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics]

The IICD welcomes Ruiyang He, @ColumbiaBME PhD student in @mssanjavickovic lab @NYGCtech. Ruiyang will develop novel #computationalmethods integrated with advances in #spatialtranscriptomics technologies to dissect the importance of spatial organization in development & disease.

[NYGCtech @NYGCtech]

Welcome Roy! Roy is a @ColumbiaBME student in @mssanjavickovic lab @NYGCtech, working on optimizing multi-omics technologies and leveraging such tools to identify therapeutic targets for disease networks. #ColumbiaBME #NYGCtech #multiomics #therapeutictargets

Roy!

[Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics]

The Institute welcomes a new member: Roy Ghosh, a @ColumbiaBME student in @mssanjavickovic lab @NYGCtech, who will work on optimizing multi-omics technologies and leveraging such tools with the aim of identifying translatable therapeutic targets critical to disease networks.

[NYGCtech @NYGCtech]

🔬Insights from @mssanjavickovic on her journey through interdisciplinary collaboration! Discover how her work at the intersection of genomics and biomedical engineering with @NYGenome & @cancer_dynamics sparked innovation and new perspectives.🌟 #ScienceCollab #InnovationJourney

[Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics]

The Irving Institute for Cancer Dynamics celebrates 5 years. The idea of creating an Institute @Columbia bridging the gap between #mathematicalsciences & #cancerresearch started in 2016. In the Spring of 2018, @cancer_dynamics became a reality. Read more:
https://t.co/fhIPFf2AMW

[Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics]

Another researcher joins the IICD: Craig Fouts, an MS in @APAMMSECU, develops statistical #machinelearning tools and designs probabilistic models for #singlecell genomics in @mssanjavickovic and @bidumit labs @NYGCtech.

[NYGCtech @NYGCtech]

🔬 Excited about @mssanjavickovic's insights in @CellSystemsCP on the potential of spatial molecular profiling! 🧪�� #CellSystems #MolecularProfiling 📚 Check it out: https://t.co/HJlAznQAYd

[Nature Biotechnology @NatureBiotech]

A pioneer in spatially resolved transcriptomics and genomics methods, Sanja Vicković recounts her journey from professional ice hockey player to running her own lab
https://t.co/vqGCa4mpGQ
https://t.co/g9EynuiwPm

[Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics]

IICD member Sanja Vicković was recently awarded a two-year grant from @TargetALS_fdn for her project "creating a spatial genomics resource for ALS-FTD neuropathies." Read more: https://t.co/cYLPfL6wVz
cc: @ColumbiaBME @NYGCtech @nygenome

[AGBT Meeting @agbt]

Abstract Select: Sanja Vickovic from @nygenome focuses on spatial host-microbiome sequencing at the 2023 @AGBT General Meeting in Florida. #AGBT23

[Chris Mason @mason_lab]

Spatial-host microbiome sequencing (SHM-seq) shows accurate measures of interactions between intestinal crypts’ gene expression changes and the dynamics of the bacterial residents, by Sanja Vickovic from @nygenome #agbt23

[Alex Cagan @ATJCagan]

Sanja Vickovic on spatial host-microbiome sequencing #AGBT23

[Kunal Pandit @yougotkunal]

The napari-PICASSO plugin for @napari_imaging to unmix images with fluorescence spillover is out. Come to poster 576 @agbt to chat about the plugin and teaching an @illumina
HiSeq 2500 new tricks.

[s. @mssanjavickovic]

We posted 8 positions in the last week alone @nygenome @NYGCtech Come join the best #Innovation program in the country to work with @manimota @raimondi_ivan @yougotkunal @Chao00Yan https://t.co/fp4ioo1ESR

[NYGCtech @NYGCtech]

Check out the tweetorial below on #PySeq2500 from @NYGCtech ‘s @yougotkunal and @nygenome ‘s @joanapetrescu! In it they walk you through how they used an Illumina HiSeq2500 for imaging and how you can run your advanced assay on your HiSeq2500 too!

[Kunal Pandit @yougotkunal]

@joanapetrescu and I are excited to share our work repurposing @illumina HiSeq 2500s to automate highly multiplexed immunofluorescence imaging (4i) @SciReports. 1/10
https://t.co/UrI0isRgSX

[Chan Zuckerberg Initiative @ChanZuckerberg]

High-powered imaging + genomics data + #OpenSource tools = #ImagingTheFuture!

Kunal Pandit is building an open access plugin for the @napari_imaging hub that will make it easier for researchers around the world to make detailed maps on how genes are expressed throughout a tissue

[s. @mssanjavickovic]

My labs @nygenome @NYGCtech @ColumbiaBME @UU_University hiring at all levels! If you’re interested in #techdev #singlecell #SpatialTranscriptomics @humancellatlas get in touch with bio&description of (i) what you want to work on and (ii) fav project so far [email protected]

[Alex Cagan @ATJCagan]

Ivan Raimondi from @nygenome on multi factorial chromatin profiling at single-cell resolution #singlecellgenomicsday

[Alex Cagan @ATJCagan]

Harm Wessels and Carol Dalgarno on new technologies and opportunities for single-cell perturbation screens #singecellgenomicsday

[Alex Cagan @ATJCagan]

Yuhan Hao on cross-modality integration of single cell data #singlecellgenomicsday