Nemonic-hub

NExt generation MultiphOton NeuroImaging Consortium. NSF NeuroNex hub

[Bruno Pichler @brunopichler]

It was great fun to work on this preprint with @robmlees @ibianco3 @raacampbell @natorlova Darcy Peterka @labrigger @YatsenkoDimitri Che-Hang Yu & @paqio.
Hope this helps many people to characterise their 2p microscopes https://t.co/oGBfUNNkud

[Spencer LaVere Smith @Labrigger]

Microscope standards started in 1858, and they’re still constraining optics. But we can break free. Nature Methods also published this little accompanying backstory / commentary on the Cousa: free readcube link https://t.co/aCXwsJOE2l and regular link https://t.co/kJxozGbokt.

[Nature Methods @naturemethods]

Out yesterday from the Yu and Smith labs! The Cousa objective is an ultra-long working distance air objective optimized for 2P and 3P imaging that opens the door to new imaging experiments, including in non-human primates. https://t.co/urGxbYeryU

[Spencer LaVere Smith @Labrigger]

The Cousa objective: Having 20 mm of working distance in air can enable new experiments for two-photon imaging, particularly challenging experiments in living animals. The Cousa manuscript is out now. Open access. https://t.co/QFXYvcfFJn (1/n)

[Spencer LaVere Smith @Labrigger]

Updated preprint for the ultra long working distance Cousa objective. 20 mm air immersion, 2 mm x 2 mm field-of-view, 0.5 NA. https://t.co/bO9Cwq6cRZ
Blog post on it: https://t.co/QiCSKalC2Z

[Nemonic-hub @NemonicHub]

Call for Papers through April 1st! "Understanding of Neural Circuits with Neurophotonics" https://t.co/wylRNUvM1j

[Nemonic-hub @NemonicHub]

Johannes Friedrich – “Online methods for real-time analysis of calcium imaging data”

We will present online adaptations of the CNMF as well as the CNMF-E algorithm, which dramatically reduces memory and computation requirements. (Plus more topics!)

[Nemonic-hub @NemonicHub]

More upcoming talks for our February multiphoton imaging workshop (Applications OPEN!) https://t.co/CHjMcQ9RZO

Jerome Lecoq @LecoqJerome – "Running a two-photon calcium imaging segmentation pipeline with built-in deep learning denoising at scale"

[Nemonic-hub @NemonicHub]

Darcy Peterka - "Multiphoton tools for exploring and controlling neural circuits"

The multiphoton toolkit has expanded immensely in the last decade. I'll describe some modern tools for imaging & control, with an eye towards considerations for using these tools effectively.

[Nemonic-hub @NemonicHub]

Applications can be found here: https://t.co/CHjMcPSOXO

Please spread the word and encourage anyone interested in multiphoton imaging to apply!

[Nemonic-hub @NemonicHub]

Highlighting some software and data sections for our upcoming workshop!

Peter Rupprecht: Interpretation of calcium imaging data: post-processing, spike inference and artifacts

[Nemonic-hub @NemonicHub]

Kushal Kolar: New mesmerize library helps w/data organization & parameter optimization for calcium imaging analysis https://t.co/QrMe7T17ZA
"fastplotlib is a new visualization library using bleeding edge graphics technology https://t.co/24zSQ1zA5D"

[Nemonic-hub @NemonicHub]

Call for papers for a special section on Understanding of Neural Circuits with Neurophotonics is open now! Guest editors include nemonic's own Spencer Smith
@Labrigger https://t.co/wylRNUdCNb

[Nemonic-hub @NemonicHub]

We are very excited with our group of speakers for this year's workshop! This is a hands-on workshop, where you will run imaging analysis software and see instrumentation demonstrations. https://t.co/OXQAnTxnc0

[Nemonic-hub @NemonicHub]

Apply now to the 2023 Nemonic Workshop! This event will be held Feb 21-23, 2023 in Santa Barbara https://t.co/OXQAnTxnc0. Hear from experts and see demonstrations on multiphoton imaging instrumentation and analysis. Past material: https://t.co/CHjMcPSOXO

[Spencer LaVere Smith @Labrigger]

Other presenters either aren't on Twitter or I haven't located them yet. Materials from prior workshops here: https://t.co/PsGj88VHii (2/2)

[Spencer LaVere Smith @Labrigger]

Come to the 2023 Nemonic Workshop. https://t.co/C9zEu8zbK9 Feb 21-23, 2023 in Santa Barbara, California. @UNC_Optics @ptrrupprecht @LecoqJerome and others. Come learn about the cutting edge of multiphoton (2p,3p) imaging in neuroscience, both instrumentation and analysis. (1/2)