RepeatExplorer

A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.

[Macas lab @MacasLab]

Registration open to the 12th @RepeatExplorer Workshop (May 27-29), this year focusing on repeat annotation in genome assemblies ! https://t.co/LjA5ziKLqU

[Macas lab @MacasLab]

Excited to share our tools for LTR-retrotransposon annotation in plant genomes ! Supported by @ELIXIRCZ. https://t.co/7uS3yCsJ0E

[Macas lab @MacasLab]

DANTE and DANTE_LTR: computational pipelines implementing lineage-centered annotation of LTR-retrotransposons in plant genomes. https://t.co/24rOfukLTo

[André Marques @marques_et_al]

Happy to share this nice collaborative work led by the very talented grad student @YMata_Sucre
Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae)
https://t.co/RBshtSlmGx

[Pedro Lorite @PedroPlorite]

The spread of satellite DNAs in euchromatin and insights into the multiple sex chromosome evolution in Hemiptera revealed by repeatome analysis of the bug Oxycarenus hyalinipennis - Cabral‐de‐Mello - Insect Molecular Biology - Wiley Online Library https://t.co/5xmBGjH9xR

[Kay Lucek @KayLucek]

@CamilleCornet17 1st thesis paper is out @molecology: #Holocentric repeat landscapes: From micro-evolutionary patterns to macro-evolutionary associations with karyotype evolution 👉 https://t.co/jlEF5NZjDP

[RepeatExplorer @RepeatExplorer]

Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.

[Macas lab @MacasLab]

Closing a busy day at the @RepeatExplorer workshop !

[Johann Confais @JohannConfais]

So pleased to be funded by the @ELIXIREurope Travel Grant Scheme to present a demo at the @RepeatExplorer workshop with the computing facilities from @INRAE_URGI #PlantBioinfoPF and @ELIXIRCZ.

[Annals of Botany @annbot]

🔥ADVANCE ACCESS🔥: Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae)
https://t.co/uahVYeNF2g

[Macas lab @MacasLab]

Register to the @RepeatExplorer workshop which will take place on May 23-25 ! This year also featuring the REPET pipeline presented by @JohannConfais. More info and registration: https://t.co/LjA5ziKLqU

[Macas lab @MacasLab]

Happy to share our latest work on the disruption of the standard #kinetochore in #holocentric #Cuscuta plants: https://t.co/b9SDDB44Ws

[Terezie Mandakova @TeriMandakova]

Phylogenetic relationships and repeatome analysis in the South African genus Pteronia: https://t.co/SSkNTxrKpU
@IBOTCZ @CEITEC_Brno @sci_muni

[Alexander Suh 서상재 @alexander_suh]

RepeatExplorer demo by Petr Novák! @RepeatExplorer https://t.co/nZXkuaDldi #UppTransposon2022

[Macas lab @MacasLab]

A giant, multi-domain #centromere of garden pea assembled ! Check out our preprint https://t.co/IzUTOqgSIb

[Macas lab @MacasLab]

Great collaboration with the excellent team led by @marques_et_al ! Supported by @ELIXIRCZ and #GACR.

[Ovidiu Paun @ViePlantGenom]

Happy to share our new paper published in @MolBiolEvol:
Repeat dynamics across timescales: a perspective from sibling allotetraploid marsh #orchids
https://t.co/NhxBzzJchT
#polyploidy #transposableElements #mobileDNA
@CeciliaMimmi 1st author, @TeriMandakova, @__mcjamie__ & others

[New Phytologist @NewPhyt]

The #ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity @RowanSchley @cfbarrett999 @SidonieBellot @RepeatExplorer @BillJBaker @DrSDodsworth @leitch_ar @IliaLeitch https://t.co/iYmEoob6a9

[Terezie Mandakova @TeriMandakova]

Genomes, repeatomes and interphase chromosome organization in the meadowfoam family (Limnanthaceae, Brassicales) @ThePlantJournal
https://t.co/vhREpJlUzM
@CEITEC_Brno @sci_muni @muni_cz