Ron Zeira

Research scientist

[Ron Zeira @RonZeira]

Happy to share that our paper on inferring spatially resolved expression from H&E images is published in #PLOSCompBio
I want to thank @leon_anavy , Zohar Yakhini, Ehud Rivlin and Daniel Freedman for their guidance and support driving this project
https://t.co/wyPVBxZoCX

[Ron Zeira @RonZeira]

@leon_anavy זה נושא לעבודת המשך == אחרי המלחמה נעסוק בזה?

[RECOMB Conference Series @RECOMBconf]

Ben Raphael is next, PASTE2: Partial Alignment of Multi-slice Spatially Resolved transcriptomics data. #RECOMB2023

[Ron Zeira @RonZeira]

Our work on "Partial Alignment of Multi-slice Spatially Resolved Transcriptomics Data" was accepted to #RECOMB2023. @benjraphael #XinhaoLiu
PASTE2 uses a novel partial optimal transport formulation for 3D reconstruction of partially overlapping ST slices
https://t.co/dMveOvAoQt

[RECOMB Conference Series @RECOMBconf]

15 more papers are accepted to #RECOMB2023 after a round of revisions. The list is now updated: https://t.co/UMHfvXDYRU

[BioTechniques @MyBioTechniques]

Many tools can only analyze spatial gene expression in 2D, so researchers from @Princeton developed #PASTE, a tool that integrates spatial transcriptomic data from multiple slices to generate a 3D view of gene expression

https://t.co/Tk8uCRTaui

@benjraphael @RonZeira
🖥️(4/8)

[Ben Raphael @benjraphael]

Now published in revised form in @naturemethods after a constructive review process.
https://t.co/VCOFqW8UNo

[Ron Zeira @RonZeira]

A beautiful summary of our method PASTE by @MollySharlach
@mrland99 @polishstudent17 @benjraphael
https://t.co/QHRyCXQfJ5

[Nature Methods @naturemethods]

And read the accompanying News & Views here:
https://t.co/f25pza8Fvz

[Nature Methods @naturemethods]

Using transcriptomic similarity and spatial coordinates, PASTE allows aligning and integrating spatial transcriptomics data generated from adjacent tissue slices. @RonZeira @benjraphael
https://t.co/2igB2Mas73

[Ron Zeira @RonZeira]

Check out our presentation on “Alignment and Integration of Spatial Transcriptomics Data” tomorrow at #RECOMB2021

[recomb2021 @recomb21]

#RECOMB2021 begins tomorrow at 10 am US ET with a fantastic program (https://t.co/fjXs6cwPfo).
The first day of the conference will feature welcome remarks from the organizing committee, two distinguished keynote talks, and four sessions.

[Ron Zeira @RonZeira]

How close is a copy number profile to a whole genome duplication event?
Check out our #WABI2021 paper on “Genome Halving and Aliquoting Under the Copy Number Distance” with Geoffrey Mon and @benjraphael
https://t.co/2N5jFKubsP

[Ron Zeira @RonZeira]

Preprint of our method PASTE for alignment and integration of spatial transcriptomics data.

[Ben Raphael @benjraphael]

Our new method PASTE aligns and integrates spatial transcriptomics data from multiple tissue sections. Great work by @RonZeira and @mrland99 1/4
https://t.co/rhFbNwPQBH