Saran Pankaew

Computational systems biologist
Postdoctoral researcher at Institut Curie 🇫🇷
Omics data, model and things in between

[Mayank Chugh (he/him) @mayank_mchugh]

📢'The World Is Your Oyster' is for those who are born in global north countries--don't experience visa bureaucracy & emotional burden that non-white global south scholars do. Citizenship is a privilege that we need to recognize in the academe. 1/n

https://t.co/0PyvvH7fGM

[Vincent Noël (@vincent-noel.fr on BlueSky) @vincentnoel72]

The preprint describing our work for efficiently using #MaBoSS on #HPC is out! It describes the new implementations we developed in the @PerMedCoE project: One extending MaBoSS to use #MPI and a brand new for #GPU (>100x faster !). Have a look 👇
https://t.co/x7WeCh8CF3

[Ramon Massoni Badosa @rmassonix]

When the installation guide starts with "devtools::install_github()" and not "install.packages()" or "BiocManager::install()"

[Abhineet Ram @abzzram]

Our 2-part review on ERK dynamics is out! It was great to highlight some of the amazing work done by the MAPK field, including @SantosLaB8 @PertzL @toettch @RegotLab @BugajLab, and many more! https://t.co/DJtZJZ6Wxa

[CRCM - Cancer Research Centre of Marseille @crcm_marseille]

Two CRCM teams integrate new members💪@FlavioMaina and Dominique Payet-Bornet, together with their respective teams, now joined @borg_jp and @EstelleDuprez.
👉 https://t.co/zvJKsSvYyd
🤝 Welcome to them !

[PerMedCoE @PerMedCoE]

🧐Great presentation yesterday by @SaranPankaew from the @institut_curie on "The Power of Logic: Modeling #Cancer across scale, supported by omics data" at the @EMBO Workshop 2023: #Computationalmodels of life

#PerMedCoE #HPC #digitaltwins #EMBOworkshop #EMBOcompModels

[Åsmund Flobak @asmundflobak]

Our paper on automated logical model calibration is out! Prior knowledge is paramount to synergy predictions. PI3Ki and TAK1i synergistically reduces tumor growth in cancer cell line and xenograft.
https://t.co/S0P8mB5MWC
#JohnZobolas @mtrkuiper @NTNU @NTNUikom @DrugLogics

[Saran Pankaew @SaranPankaew]

@MRuscone @icsb2023 Thanks Marco for a kind word :)

[PerMedCoE @PerMedCoE]

🚀 Join us on Nov 7, 2023, for a deep dive into Multiscale Modeling & Cancer Cell Invasion with Marco Ruscone from @institut_curie! 🧬🔬 Unlock insights into tumor microenvironments & explore innovative in-silico simulations! Register Now! 👉 https://t.co/RhBDuJQX0t

[SysBioCurie @SysBioCurie]

Our @SysBioCurie team retreat at Gisors in late August, where we brainstormed about the future of our field. A bit of science and a lot of fun !

[Arnau Montagud @ArnauMontagud]

Last days to submit your abstracts to this amazing workshop!⬇️

[Arnau Montagud @ArnauMontagud]

📣Are you interested in learning how to create realistic, scalable human digital twins of cells, tissues, and organs? Join us for the @EMBO Workshop: Computational models of life, from molecular biology to digital twins, on 26 Nov-1 Dec 2023. Don't miss out, apply now! 🔬🧠💻📚👇

[Saran Pankaew @SaranPankaew]

If you’re working in computation biology or interested in it, join us for
EMBO Workshop, Computation models of life: From molecular biology to digital twins on 26 November-1 December.

The deadline for the abstract is 4 September.
Follow this link here :
https://t.co/kO3bNO7qVD

[Åsmund Flobak @asmundflobak]

Highly recommended: Institut Curie's 6th course on Computational Systems Biology of Cancer: Models of data, data for models: https://t.co/FqtyZgVpou. All profiles welcome: Master & PhD students, post-docs, researchers, physicians, etc. Fantastic course, excellent networking!

[Saran Pankaew @SaranPankaew]

@Thiti_Suttiyut Congrats! And goood luck with your future endeavors :)

[Vincent Noël (@vincent-noel.fr on BlueSky) @vincentnoel72]

A new PhysiCell is out, which comes with a new version of PhysiBoSS ! Many new things, mostly to prepare for a huge simplification of PhysiBoSS model building, thanks to PhysiCell studio. Stay tuned !

[Ming "Tommy" Tang @tangming2005]

People think Machine learning can solve all the biology problems.

In reality, see the MEME.

That said, ML is very powerful when used correctly.
8 papers to avoid ML pitfalls in biology👇 🧵

[Ben Hall @Hall_b_a]

Very excited to share the front cover of MSB with the Zamboni group, for our new work “heterogeneity of the cancer cell line metabolic landscape”!

We explore the relationships between #cancer driver mutation and #metabolism across different tissues!

https://t.co/kXOfHFXSQn

[Kemper Complement Lab @CKemperLab]

Hi all. We're happy to share our latest paper, just published in @CellReports. We developed a scRNA-seq pathway analysis package and applied it to look at T cell activation in vitro and in tissue. Here's the paper: https://t.co/7NIzcW2C2F.

[Dr Anna Niarakis @Annaerial]

This year my group is participating in the ApogeeBio call for hosting postdoc researchers! If you want to come to Paris and work in the Genopole campus - don't hesitate to contact me. Application deadline:30/01/23. Please RT! https://t.co/ZirkS0Mcol
#genopole #research #postdoc