Wenwen Huo

Postdoc at Tufts studying antibiotic resistance and host-pathogen interaction. Passionate about deep sequencing and computational biology. Views are my own.

[Wenwen Huo @WenMushroom]

@Luke_Boitjie What’s worse is they tell you it’s delayed then you’re chilling at home when they come back with “nvm it’s on time” 🤣

[Wenwen Huo @WenMushroom]

@vscooper Do you worry that your queries may get incorporated into its database and be fed to other users 😅 can we ever use it locally

[Wenwen Huo @WenMushroom]

@Rosconi_FA @jomcinerney Congrats!!!

[Wenwen Huo @WenMushroom]

@palmer_lab Miss the lab!

[Wenwen Huo @WenMushroom]

@AbbyLCurtis @STCmicrobeblog Woohoo!!! So excited to read it!

[Wenwen Huo @WenMushroom]

@MikeNeug Congrats on your grant!!!

[Wenwen Huo @WenMushroom]

@MikeNeug Yeah Jupyter notebook is very interactive and can be a good way to save your scripts and visualize output. I mainly use it for testing purposes

[Wenwen Huo @WenMushroom]

@Rosconi_FA @tvanop @BLSundaresh @LuisaNi05352959 @nemibg Congrats!!!

[Wenwen Huo @WenMushroom]

@palmer_lab Hands down!

[Wenwen Huo @WenMushroom]

@palmer_lab 10 years of Palmer lab!

[Ralph Isberg @IsbergRalph]

1/10. Pleased to tell you about our introductory work on drug resistance evolution in A. baumannii, spearheaded by former fellows Lindsay Busch and @WenMushroom, along with students @JHernBird and Efrat Hamami, with supercollaborators Jason Rosch, @tvanop @vscooper @SirMicrobe.

[Wenwen Huo @WenMushroom]

@NatureMicrobiol @tvanop @vscooper @SirMicrobe @IsbergRalph @JHernBird

[Nature Microbiology @NatureMicrobiol]

OUT NOW👉Immunosuppression broadens evolutionary pathways to drug resistance and treatment failure during Acinetobacter baumannii pneumonia in mice
By Isberg & co @WenMushroom @tvanop @vscooper @SirMicrobe

Read it here: https://t.co/csc6cUjLMg
https://t.co/GiAquotDj6

[Wenwen Huo @WenMushroom]

@Luke_Boitjie I think Genewiz does it. They do everything

[Wenwen Huo @WenMushroom]

@NicoleDeNisco GitHub might handle database depending on what it is. Amazon AWS def handles it, but requires more configuration

[Wenwen Huo @WenMushroom]

@aaronquinlan My personal experience is that both Geneious and CLC Genomic Workbench should handle 1000x easily (both are commercial products though). Going deeper would depend on the computer memory (and storage if using CLC).

[Ralph Isberg @IsbergRalph]

1/ Fantastic #AcinetoVibes product of hard work by @MarioFeldman9. Great job by @m_strent. Thanks to all involved. Here is some more background on presentation by @JHernBird.

https://t.co/bZ1NsQrTzx

[Wenwen Huo @WenMushroom]

@vscooper You are lucky if you can find it in supplementary methods. Sometimes I have to locate the primer sequences to locate the gene!

[Wenwen Huo @WenMushroom]

@palmer_lab SnapGene! Lol