Yannis Nevers

Post-doctoral researcher interested in Comparative Genomics.

[Yannis Nevers @Why_NeverS]

Nothing in biology makes sense.

[The Biodiversity Genomics Academy @TheBGAcademy]

Session 24: OMA/OMArk is starting in 1 hour (14:00 UTC).

To join in the session, jump over to our discord at: https://t.co/FtxlJMZQ5Y

Or you can join in on the YouTube stream at: https://t.co/Y9BRNe01pE

@SinaMajidian @OMABrowser

[Sina Majidian @SinaMajidian]

In half an hour, Yannis Nevers @Why_NeverS and I will be talking about OMA and OMArk for homology exploration and gene annotation quality control! Streaming available on https://t.co/NB4qqFi9t4

[The Biodiversity Genomics Academy @TheBGAcademy]

Another great day of sessions tomorrow with:

T2T assemblies w/ Verko - @sergekoren at 6am UTC
Genomes on a Tree - @CibeleCaio at 12pm UTC
OMA/OMArk - @SinaMajidian at 3pm UTC

Join us on https://t.co/MrIW1UZEUI | Sign up at https://t.co/b8kWTcaaSQ

@EBPgenome @darwintreelife

[Sina Majidian @SinaMajidian]

Interested in minimizers and their applications in genomics? Check out our review.. When Less is More:https://t.co/CTEuhUXS6x in @GenomeBiology! A great team effort by
@El_Malijo @silviaprietob @LucyFISHgerald @YazdizadehAli @sedlazeck @cdessimoz @Gloveface

[Deepak Yadav @dpkyadav23]

An insightful talk by @cdessimoz explaining OMArk, a work led by @Why_NeverS, at #ECCB2024.
@dbc_unil

[Richard Durbin @richard_durbin]

Gene Myers just released super fast whole genome aligner https://t.co/BE5j13d9Q7. He and @c1zhou and I have lots of ideas for downstream use.

[Sina Majidian @SinaMajidian]

📢CALL FOR ABSTRACTS📢

🌟Abstract submission is now open for the Quest for Orthologs meeting #QFO8 which will be held at the University of Quebec in Montreal, Canada on July 17-18!

More info at https://t.co/5mYWGZFqed
Deadline: April 26.

[Sina Majidian @SinaMajidian]

Heading to Paris to give a talk on FastOMA and Read2tree for orthology and phylogeny inference! Thursday 7th, at 2pm in the PAGE group (Protein And Gene Evolution) at the Institut Pasteur!

Read2Tree: https://t.co/cfUkuLs6DS
FastOMA:
https://t.co/LV4oI8z9Yj

[European Reference Genome Atlas @erga_biodiv]

#ERGABlog | New Interview with @ADennis1980 - Learn about her views on the critical process of genome #annotation, the need to sequence more diverse #genomes and her vision for the #ERGA Annotation Committee

@UNamur

https://t.co/FvKv4uluCR

#Biodiversity #Genomics

[Rob Waterhouse also @rmwaterhouse.bsky.social @rmwaterhouse]

The repertoire of STING-regulated #genes in ten Drosophila 🪰 species spanning 50 million years of #evolution https://t.co/NLHmpyNnJ7 Congrats @aathbt !

[Nature Biotechnology @NatureBiotech]

Quality assessment of gene repertoire annotations with OMArk https://t.co/ykp3bddMWc

[Yannis Nevers @Why_NeverS]

You can also use it through our webserver (https://t.co/An9upBwiNi)! We provide OMArk results for many proteomes from @UniProt @Ensembl and @NCBI RefSeq. This makes it easy to compare annotations of close species. Here are the results for feline proteomes (🐱🐯🦁).

[Yannis Nevers @Why_NeverS]

Our OMArk paper is finally out at @NatureBiotech! I am excited to share the final results of our work with @Gloveface @cdessimoz @VictorRossier @DessimozLab. OMArk is a one-stop shop for eukaryotic genome annotation assessment. Link : https://t.co/wu11J7sOpN (🧵)

[Yannis Nevers @Why_NeverS]

OMArk is available on GitHub (https://t.co/Ckivzkq4o0), and you can also install it with PyPi (https://t.co/dguJUheO7L) or Bioconda (https://t.co/Ct6shPHRyk). Please give it a try!

[SIB @ISBSIB]

How to evaluate the quality of a genome annotation? Introducing #OMArk, a groundbreaking tool by SIB’s @Why_Nevers & @Dessimozlab and part of the SIB Resource #SwissOrthology, now featured in @NatureBiotech: https://t.co/Xx9a33liIA