Zarul Hanifah

PhD student at @MonashMalaysia, studying into North Selangor Peat Swamp microbial community

[Zarul Hanifah @Zarul_Hanifah]

@iiSeymour It has been a while since I signed up for early access, and we are getting the necessary GPU capacity in a couple of days. No news since regarding early access HYP basecalling, or if it will be part of dorado soon...

Please, I need it to see improvements in shotgun metagenomics

[Zarul Hanifah @Zarul_Hanifah]

@kirk3gaard @EckartStolle @nanopore It has been a while since I signed up for early access, and we are getting the necessary GPU capacity in a couple of days. No news since regarding early access HYP basecalling, or if it will be part of dorado soon...

[Zarul Hanifah @Zarul_Hanifah]

I watched @GeiselBiofilm Twitter video back in 2019 on the Volta experiment, the yearly tradition of MBL Microbial Diversity Course @MBLScience . Never really thought of doing it, but we finally did it :)

https://t.co/41Sxx8md2Q

[Luis E. Valentín-Alvarado @luisarchaeota]

3rd chapter of my dissertation finally published in @NatureComms! We reconstructed the first complete Asgard archaeal genomes from short reads, validated with long reads. Genome structures & metabolic insights reveal key roles in carbon/hydrogen cycling in wetlands.

[Liyana Azmi @ynaazmi]

PhD position available under an FRGS 2024 Scheme-funded project at the Faculty of Medicine and Health Sciences, Universiti Sains Islam Malaysia, Nilai.

[Jan-Hendrik Müller @kolibril13]

Here’s a proof of concept showing how data calculated in Python can be used in Blender. #Blender can process the received data with custom geometry nodes, custom shaders and full 3D interactivity. This minimal example uses @networkX in @ProjectJupyter. Learn more in this thread🧵

[Zarul Hanifah @Zarul_Hanifah]

Were you writing in the middle of the workshop?! @BobLeung4 @TessFHutchinson @Paula_Gomez4 Congratulations!

[bioRxiv Microbiology @biorxiv_micrbio]

Wetland tree barks are dynamic hotspots for microbial trace gas cycling https://t.co/5LSWho9i9s #biorxiv_micrbio

[Dr. Jennifer Pett-Ridge @Jeffinerca]

A while ago @hazlin_85 wrote to ask if we would teach a course at @MonashMalaysia about stable isotope probing(SIP). As you prob know, I’m a huge advocate. We (Steve Blazewicz, Mike Allen & I) were excited to develop a SIP curriculum and get to visit Kuala Lumpur. A 🧵

[Zarul Hanifah @Zarul_Hanifah]

@kirk3gaard @liuleitw @ChenjingJiang @nanopore What is the max amount of RAM you used at a time? And how long was the execution time please 🥺

[Zarul Hanifah @Zarul_Hanifah]

@Jeffinerca Cc @hazlin_85

[Zarul Hanifah @Zarul_Hanifah]

🔬 Excited to announce the DNA-SIP Workshop at Monash University Malaysia, June 24th-28th, 2024!

🧬 Join us for a groundbreaking event delving into DNA Stable-Isotope Probing, a method revolutionizing research in microbial ecology and beyond!

https://t.co/pedA1Kwc28 [1/3]

[Zarul Hanifah @Zarul_Hanifah]

cc @Jeffinerca ����

[Zarul Hanifah @Zarul_Hanifah]

LATE NEWS: New Publication!
Unravelling the link between SARS-CoV-2 mutation frequencies, patient comorbidities, and structural dynamics

Thank you Dr @ynaazmi for the opportunity to collaborate and having us as part of this research 🙇

https://t.co/zu9afm39Xh

[Luis E. Valentín-Alvarado @luisarchaeota]

1/🧵 I’m really excited to share our new pre-print on #AsgardArchaeaa manuscript now on #bioRxiv with co-first @katy_appler! We described soil-associated Asgard archaea predicted to be non-methanogenic acetogens. Kuddos to @val_deanda @BanfieldLab @MSchoelmerich

[Zarul Hanifah @Zarul_Hanifah]

@kirk3gaard @nanopore Probably, for every complete genome with a high ANI to another existing conplete genome, align side by side and see what is different. Could it be prophage, or ICE, or just something else

[Zarul Hanifah @Zarul_Hanifah]

Discovering naturally-occurring microbiota in disease suppressive soil... https://t.co/Oyla2qgBpX

[Zarul Hanifah @Zarul_Hanifah]

Genome Sequence of Lelliottia sp. Strain WAP21, Isolated from Soil in Canola Fields in Victoria, Australia | Microbiology Resource Announcements https://t.co/tIhkDEPN5M