Applied Bioinf Core

Computational and analytical support for biomedical research

[Applied Bioinf Core @abcBioinfo]

@oxpeter presented a great update on Jupyter Notebooks after attending
@JupyterCon, see https://t.co/AlWwJbs8ho for the notes!

[Applied Bioinf Core @abcBioinfo]

Check out our new website! https://t.co/4DMImWEXks

[Applied Bioinf Core @abcBioinfo]

"1 million reads provide good accuracy for the abundance of highly-expressed genes" http://t.co/aXJ267YOgP

[Applied Bioinf Core @abcBioinfo]

A comparison of extraction kits for the isolation of total RNA from small tissue samples http://t.co/rFYTK79Z7f

[Applied Bioinf Core @abcBioinfo]

Assessing the effects of low-input RNA-seq http://t.co/CZZJZTqo5e

[Applied Bioinf Core @abcBioinfo]

Effect of RNA integrity on uniquely mapped reads in RNA-Seq http://t.co/B5boXxZ8Vx #bmcresearchnotes

[Applied Bioinf Core @abcBioinfo]

subSeq: Determining appropriate sequencing depth
through efficient read subsampling http://t.co/04RhErMv7f

[Applied Bioinf Core @abcBioinfo]

RNA-seq Analysis Reveals Contamination of Multiple Nasopharyngeal Carcinoma Cell Lines with HeLa Cell Genomes http://t.co/F4YM8KIV62

[Applied Bioinf Core @abcBioinfo]

An RNA-seq Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex http://t.co/kB2RULtXds

[Olivier Elemento @ElementoLab]

Best Paper award at Usenix Security'14 conf: framework for privacy in pharmacogenomic analyses https://t.co/GxoQ5cdu7f via @jgiannopoulou

[National Human Genome Research Institute @genome_gov]

The final #GDS policy sets expectations for investigators to broadly & sensibly share research data. http://t.co/9xeGHruW7R #datasharing

[Applied Bioinf Core @abcBioinfo]

Omics Pipe: A Computational Framework for Reproducible Multi-Omics Data Analysis http://t.co/W8JTFYGQpJ

[Applied Bioinf Core @abcBioinfo]

Correlation coefficient is insufficient at assessing equality in replicates http://t.co/Estn7pSipV #journalofbiologicalresearch-thessaloniki

[Applied Bioinf Core @abcBioinfo]

Correction of gene expression data: performance-dependency on inter-replicate and inter-treatment biases http://t.co/zmWo8LVG6P

[Applied Bioinf Core @abcBioinfo]

Detecting and correcting systematic variation in large-scale RNA sequencing data http://t.co/AmAgWb3Yph

[Applied Bioinf Core @abcBioinfo]

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-gen. sequencing study http://t.co/EOYSgfZnsq

[Applied Bioinf Core @abcBioinfo]

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the SEQC http://t.co/L4AGRrvrRP

[Applied Bioinf Core @abcBioinfo]

Reagent contamination can critically impact sequence-based microbiome analyses http://t.co/2tkdAAjTHD

[Applied Bioinf Core @abcBioinfo]

Influence of RNA extraction methods and library selection schemes on RNA-seq data http://t.co/vfV4XpIyA2 #bmcgenomics

[Applied Bioinf Core @abcBioinfo]

#PLOSONE: A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data http://t.co/ScZehMcVYN