We've put out a short preprint today showing some updates in Readfish for @nanopore adaptive sampling. https://t.co/GQJJkIql33 @alexomics is giving a talk shortly at the #nanoporeconf about this - but a short thread here.
If you haven't already, check out this super cool paper from @alexomics and team, describing their new adaptive sampling toolkit Readfish — for enriching targeted panels in human genomic and metagenomic samples:
https://t.co/BcSV4V9l1I
@miles_benton @CallumJCParr @mattloose If you get a chance, could you open an issue on https://t.co/zrI13GfwH8 ? Just with what you tried/saw. I haven't tried using ARM with this yet, but it'd be good to see if we can get it working
So - our ReadFish paper came out on Monday https://t.co/LWx6m1HHXZ using GPU - but what if you only have a laptop? Here's an update from @alexomics to our tools that enable ReadFish on Mac, Linux or Windows with no additional GPU or compute. https://t.co/CgicPm4nUH for details.
Very happy to share our work on selective sequencing use the @nanopore MinION. Code is here: https://t.co/iEcFCnR1rb and the paper is here: https://t.co/9KOSnLAl5j