Audrey Stott

Bioinformatics systems administrator @PawseyCentre - containers, Kubernetes, cloud, high performance computing

[Pawsey Supercomputing Research Centre @PawseyCentre]

The second iteration from our series 'Pawsey Published' highlights a study on Environmental DNA, and utilising @nextflowio and #Singularity to address two major challenges in the analysis of eDNA

Read more here: https://t.co/XfwvSj9SFL

@aud_stott @MarcoDeLa83

[V @vsoch]

Finally, the most important part! This work was a team effort between myself, @MarcoDeLa83, @mathgeorgia, Matthieu from @sangerinstitute, and Audrey from @PawseyCentre. We were having fun, solving problems, and when it was all done we were like wow, this is kind of cool right? ☺️

[V @vsoch]

We've been quietly doing some really fun (and cool) work on @Singularity_CE HPC #shpc this year, and we have a pre-print that I'm so excited to share! 🥳 https://t.co/u9iQPBFUtg. If you don't like reading papers, I feel you, let's walk through some of the work! 🧵

[Audrey Stott @aud_stott]

@PhilippBayer I did biology all the way from middle school to high school to undergrad and then postgrad. I have a master's degree in biomedical science. But I am still a clueless biologist. :D The blogger is right - textbooks have dulled biology... when it is in fact a truly wondrous subject.

[Audrey Stott @aud_stott]

@PhilippBayer Please don’t. I think it was an opportunity for me to realise it wasn’t for me too. I’m still very glad to have been your student twice!

[Audrey Stott @aud_stott]

@PhilippBayer PS: Anger is a very great red flag to get out!

[Audrey Stott @aud_stott]

@PhilippBayer I cannot imagine it was an easy decision to make, kudos to you for your strength and bravery! It's a huge step... but as one who crossed over early enough, it is a very joyful step, especially if you have something great in store on the other side! Gambatte!

[Dr Marco Claudio De La Pierre 🏳️‍🌈 @MarcoDeLa83]

Fresh new features for #shpc, a technology to deploy containers as modules on #hpc (and #cloud, and any workstation really). Thank you @vsoch for this beautiful ongoing collaboration. To be deployed at @PawseyCentre on our upcoming 50 Pflop #supercomputer @SetonixHPC. Stay tuned!

[Audrey Stott @aud_stott]

@PhilippBayer Sorry Philipp I am not active on Twitter. Glad you got it sorted! I can't get git push to work on it though!

[Dr Marco Claudio De La Pierre 🏳️‍🌈 @MarcoDeLa83]

Missed the @PawseyCentre @AusBiocommons webinar series on #containers for #HPC & #Cloud this week? No worries!
Head for the online tutorial here: https://t.co/QNX4MQbqjI
You'll find webinar recordings and hands-on exercises! #bioinformatics @aud_stott @sarah_beecroft

[Audrey Stott @aud_stott]

@tomkXY I “tried” it by accident as I didn’t check that the container I pulled was a developmental one. It required sooooo many package updates I decided to pull 3.6.3.

[ABC Science @ABCscience]

These were some of the first images ever taken of the coronavirus that causes #COVID19. They were created by two scientists in Melbourne using a transmission electron microscope.

"You’re looking at the enemy," says Dr Jason Roberts.

See it for yourself: https://t.co/UxbtHtfw3Z

[Daniel Pass @passDan]

@PhilippBayer Definitely feeling this. Talking with friends and family by video call at the end of the day is just becoming taxing too. There's an interesting psychology to it.

https://t.co/YUd2TOXUFO

[Pawsey Supercomputing Research Centre @PawseyCentre]

@PawseyCentre is launching #PawseyHour - Ask Me Anything, #AMA, on 6 Apr, 10am. To reach out to the #research community and for you to join in a discussion with Pawsey expert staff and an online community of peers. Login here: https://t.co/f64tSwYyS0

[Pawsey Supercomputing Research Centre @PawseyCentre]

@PawseyCentre 's March newsletter is out now: https://t.co/iIA2jAXgjI

🐠Fish teaching #robots to swim
😷#COVID19 Accelerated Access Initiatives
☁️New #Nimbus #Cloud Service #HTC
💻#CapitalRefresh Update
🏫New online Pawsey Hour will launch next week
📈@WADataSciHub Update

[Blair Bethwaite @blairbethwaite]

Looking for someone to lead a great team of dedicated research computing peeps -
https://t.co/vOj1kQyv5i

[Audrey Stott @aud_stott]

@HackyHourUWA Ok I’ll try next Tuesday 😊

[Audrey Stott @aud_stott]

@lindamciver @annabelcrabb Love her writing!

[Audrey Stott @aud_stott]

@HackyHourUWA No I meant it in a good way! You’re a machine!

[Audrey Stott @aud_stott]

@shazanfar @john_t_ormerod 😂👍