OrthoFinder v3: a tool for phylogenetic orthology inference with boosted accuracy and scalability for massive datasets. @Steve__Kelly@dr_belcher@David__Emms
https://t.co/rig74Y6iT7
Sandpiper 2 is up. 913,000 metagenomic community profiles w GTDB R232 via SingleM, 200k more than 1.0. https://t.co/YYxXe1l8Cz
GlobDB coming.
Thanks to @aroney_samuel@IAmTotesBrett Josh Mitchell and especially the new kid @StefanHerh
The SPEC CPU 2026 benchmark suites are here! As the industry standard for vendor-neutral performance, this suite uses 52 real-world apps to help server buyers evaluate how the latest CPUs, memory & compilers handle intense workloads. 🔗 https://t.co/XmEV1L9XjZ #SPEC#Server#CPU
🦠🧬🖥️ Bakta v1.12.0 is out
with tons of tiny improvements and bug fixes, too many to list all:
- partial genes on linear seqs
- improved errror handlings & runtimes
- support Python 3.12 & 3.13
- ...
Thank you to all bug reporters and contributors!
https://t.co/FVBqmqRSRn
DIAMOND v2.1.17 has new output fields sRANK to print taxonomy nodes of the given rank associated with the subject sequence, where RANK can be any rank in the NCBI taxonomy, e.g. sdomain, skingdom, sphylum, sorder, sgenus, sspecies, etc. https://t.co/YtVTQlDQ1N
🚨New preprint out!
We present a foundational genomic resource of human gut microbiome viruses. It delivers high-quality, deeply curated data spanning taxonomy, predicted hosts, structures, and functions, providing a reference for gut virome research (1/8) https://t.co/BejXcSxauc
Sup' #python#bioinformatics ! Didn't announce it so far, but now that it's working, I'm pleased to say you can now pip install BLAST+ (and more)! Technicalities below🧶 1/12
DIAMOND v2.1.15 now supports all taxonomy features for BLAST databases, and support for using BLAST databases has also been added to the Bioconda version https://t.co/YtVTQlDicf