biodatageeks

Geeking around bioinformatics and big data. Research team at @PW_edu

[bioRxiv @biorxivpreprint]

Cryo-EM Structure of OSCA1.2 from Oryza sativa: Mechanical basis of hyperosmolality-gating in Plants https://t.co/DjpHPPVT18 #bioRxiv

[biodatageeks @biodatageeks]

Check out #sequila - recent work by #biodatageeks on scalable depth of coverage with #apachespark

[bioRxiv @biorxivpreprint]

SeQuiLa-cov: A fast and scalable library for depth of coverage calculations https://t.co/pnC8arRdDW #bioRxiv

[biodatageeks @biodatageeks]

@brent_p @JMonlong Thx @brent_p for reading. CLAMMS and popSV show that appropriate reference selection improves accuracy of CNV detection. Agreed and cited (CLAMMS). But they don’t provide comparison of selection strategies and their computational complexities. This is the core of our study.

[Zettagene.com @zettagene]

Finally we have our paper published! #Sequila is a fast, scalable, #SQL -centric engine for processing #genomic intervals. #bioinformatics #BigData #ADAM #hail #databricks https://t.co/YFcyz7dgJy Let us know if you want to read it, you can also visit https://t.co/1QSlSYZVVd

[bioRxiv Bioinfo @biorxiv_bioinfo]

Clustering-based optimization method of reference set selection for improved CNV callers performance https://t.co/hy7JkvHla9 #biorxiv_bioinfo

[biodatageeks @biodatageeks]

Look at that - our poster on accurate CNV calling at #ASHG17.

[biodatageeks @biodatageeks]

If you have some time today - spend it on reading our recently published #paper. Congrats @GambinTomasz! https://t.co/yNsrt7OVRm

[biodatageeks @biodatageeks]

Morning session at #NGSchool2017. @GambinTomasz talks about structural variants.

[biodatageeks @biodatageeks]

hey, check out our brand new website: https://t.co/2b6EM2bmKs

[biodatageeks @biodatageeks]

Hello World!