Christina Faust

landscape disease ecologist @UofG_SBOHVM

[RESTOREID @RestoreidEU]

🧬 Join the @helsinkiuni as a Postdoc! Study pathogen transmission & ecosystem health with a global research team in projects like @BEPREP_EU or #RESTOREID.

Applications close Dec 9. 👉 https://t.co/4UvWPaqdHu

Apply now!🌍

#PostdocJobs #EcosystemHealth #DiseaseEcology

[IDDjobs: infectious disease dynamics jobs @IDDjobs]

CLOSING SOON: Postdoc (Hatfield/London, UK)
Infectious disease dynamics with metaviromic data
with @jnaraghwani @cl_faust @bahanbug @HassellJm
at RVC
More details: https://t.co/4GDQaXQqv3

[Christina Faust @cl_faust]

Great postdoc opportunity to understand virus dynamics in wild rodents - reach out with any questions. Deadline in just over 2 weeks!

[WAME STN @stn_wame]

📢Announcing the next set of talks in our @stn_wame @eseb_org virtual seminar series! 📢

A fantastic lineup of speakers will explore the evolutionary ecology of the virome

7th Nov 2024, 14.30-16.30 BST / 09.30-11.30 EST / 06.30-08.30 PST. See link below

[David Redding @David_W_Redding]

Come and work with my amazing team at @NHM_Science (London, UK) examining zoonotic diseases in a onehealth context. 2 & 3 yr post-doc positions with a stats modelling and meta-genomics focus respectively: https://t.co/zlE3umzQjK https://t.co/oTCdji4NIa
Closing: 8th Sept 2024

[anna-liisa laine @annaliisalaine]

Please RT‼️I'm recruiting a PhD student for a fully funded 4 year position to study how ongoing biodiversity change alters disease risk in plant communities in the Åland archipelago meadow ecosystem. DL 28 Aug
https://t.co/vinSIP1KOg

[Christina Faust @cl_faust]

🚨 New Technician post in @UofGSBOHVM - working with physiology and bacteriology : https://t.co/EVd6Rkp2c5 closing Monday July 22

[African Academy of Sciences @AASciences]

The #ARISE programme is paving the way for #research & #innovation exchange across Africa. ARISE supports nearly 600 researchers across Africa, led by 47 principal investigators, hosted in 38 African countries.
Learn more 👉https://t.co/iNT45GwyAe

@EU_Partnerships
@EU_Commission

[Science Immunology @SciImmunology]

Controlled experimental infections with #Schistosoma mansoni reveal how the human #immune response to #schistosomiasis changes over time.

Read this research and more in the July issue of Science #Immunology: https://t.co/HR7ALenALh

[UofG SBOHVM @UofGSBOHVM]

📣Recruitment Opportunity in @UofGSBOHVM

⭐️Technician Vacancy⭐️

➡️Physiological, Molecular & Microbiological Research
➡️Full Time & Open Ended
➡️Supporting Physiology Ageing & Welfare Area and
@ohrbid Team
➡️Closes 22 July
➡️Pls Repost
➡️Search 150271: https://t.co/SW5eU54TsW

[Bento Lab 🧬 @theBentoLab]

For anyone trying to get to grips with DNA metabarcoding data pipelines, here’s a detailed overview of a whole “pile” of pipelines by Hakimzadeh et al. (2024), covering metabarcoding pipeline structures, 32 software suites or precompiled pipelines, and lots of tools 👇

In their article Hakimzadeh et al. (2024) discuss the different processes involved in metabarcoding pipelines, from demultiplexing multiplexed reads, to clustering, to taxonomy assignment, and everything in between.

For each process they review general approaches, process-specific problems, and options for software and tools, with some key case studies and a whole load of references to help you to find out more.

Unfortunately their review covers Illumina and PacBio sequencing data but not metabarcoding with products from Oxford Nanopore Technologies such as MinION. Even so, there may be some overlap in general methodologies or tools that could make it useful for ONT users, especially when working with specific metabarcoding markers.

The article also has some very useful resources beyond the text:

⭐ If you want to know which pipelines run on Windows/Mac/Linux operating systems, or on the web? Check out Figure 2 in the article.

⭐ If you want to read a mini-synopsis of all the pipelines, with links to plugins, GitHub, and documentation, check out the super-useful Supplementary file 1 in the supplementary data on the article link below.

⭐ And if you want to see which software suites allow which tools to be used, check against Table S1, again in the supplementary data.

All very useful information if you're trying to get an understanding of the software landscape available for metabarcoding data processing, and one to bookmark for future reference!

You can find the article here:

Hakimzadeh et al. (2024). A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses. Molecular Ecology Resources, 24(5), e13847.
https://t.co/lwkp7j7eUZ

And for those without journal access, you can read a preprint on Researchgate here:

https://t.co/h95caGFuQ2

[Parasite - The Journal @ParasiteJournal]

Population genetic structure of Schistosoma bovis and S. curassoni collected from cattle in Mali
https://t.co/aHYGNGfplk

[Ana Bento @AnisabelBento]

I'm looking for TWO postdocs to join my lab @cornellvet If you are interested in disease (re)-emergence, expansion & dynamics have a look at my lab: https://t.co/o0oMSwwqxY & details of the positions here: https://t.co/5CTNEiV6mc Reach out if you have any questions 🤓

[OHRBID @ohrbid]

There is a new technician post available based part-time @ohrbid - please share widely! Closing date Monday July 22: https://t.co/GAE1TZCcM3

[Liam Brierley @L_Brierley]

🚨👨🏽‍🔬👩🏿‍🔬𝗣𝗼𝘀𝘁𝗱𝗼𝗰 𝗵𝗶𝗿𝗶𝗻𝗴 𝗮𝗹𝗲𝗿𝘁!

Want to come work at @CVRinfo with me on biostatistical and ML models to understand how viruses infect and adapt to new hosts and new tissues?

Apply @ https://t.co/ZhCOJPJwPt, deadline 22 July!

#bioinformatics @UofGSii

[MalariaGEN @malariagenomics]

A new comment in @NatureIndex explores the significant challenges African scientists face due to the lab supplies market's inefficiencies.

Barriers include high costs, logistical challenges & huge delays, which stifle the continent's research & innovation https://t.co/4LumloNl89

[Zoonoses & EID @ZoonoticDisease]

#Zoonoses surveillance in a semi-arid pastoral ecosystem in Kenya

Amazing work by our joint team based in Oloitoktok, southern Kenya, involving humans, animals and the environment #OneHealth

@ILRI @CGIAR @LivUni_IVES @LivUniHLS @OwsdSecretariat @DiscoverJKUAT

[NERC Environmental Omics Facility @NERC_EOF]

Due to a very high number of enquiries, the submission deadline to the NEOF 'Omics pilot competition has been extended from 1/7 to 3/7. The consultation window closed 6/6.
https://t.co/iQaJWNsiHa

[WrEN @WrENproject]

Are woodland plants 🌻colonising newly created woodlands 🌳? 👇
https://t.co/d90pfFxkLD

[Journal of Applied Ecology @JAppliedEcology]

Land consolidation impacts the abundance and richness of natural enemies but not pests in small-holder rice systems 🌾

Encourages future research to focus on the detailed assessment of the function of linear habitats 📑

🔗 https://t.co/IpuMDWcpC6