Cyril Matthey-Doret @[email protected]

Data Science Engineer @SDSCdatascience | Genomics, Reproducibility, Open data | Previously @institutpasteur and @UNIL

[Jim Shaw @jim_elevator]

Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler. With @lh3lh3.

https://t.co/ingqEXblza

[Pierre Marijon 🏳️‍🌈 @pierre_marijon]

Hello to all #bioinformatics #rustlang,

I often copy code to generate data when writing tests. After 3 or 4 times, I got fed up and created biotest crates.

biotest can generate fasta, fastq and vcf, I'm open to any suggestion, feedback or contribution.

https://t.co/8UPwdw1hA1

[Casper van der Kooi @CaspervdKooi]

RECRUITING two PhD candidates: on butterfly colour & behaviour, and on flower colour & scent; Please RT

[Vim Club @ClubVim]

RIP Bram Moolenaar

https://t.co/vX3Lb47lm8

[Chris Mungall @chrismungall]

Here's our pre-print describing our GPT-3 based knowledge extraction tool SPIRES: https://t.co/8b57yidudx. Great work from @harry_caufield et al! SPIRES allows you to specify a knowledge schema (in @linkml_data) and then populate instances of that schema from unstructured text

[Ben Franta @BenFranta]

Compiled by @VatanHuzeir, the latest cache of internal documents describing Big Oil's concealed knowledge of global warming is a gold mine.

One bombshell is a confidential @Shell scenario report from 1989 which imagined two futures: SUSTAINABLE WORLD and GLOBAL MERCANTILISM 🧵

[Yann LeCun @ylecun]

LLaMA is a new *open-source*, high-performance large language model from Meta AI - FAIR.

Meta is committed to open research and releases all the models the research community under a GPL v3 license.

- Paper: https://t.co/c2CJwpRcSL
- Github: https://t.co/fGCkA9Mol0

[Dr Joe Roberts @Dr_Joe_Roberts]

The collapse of insects

https://t.co/wbVPBj86KL

[Deepak Unni @deepakunni3]

Starting off SWAT4HCLS 2023 with a keynote from @CrameriKatrin about the Swiss Personalized Health Network @SPHN_ch @ISBSIB #personalizedhealth #SWAT4HCLS #SWAT4LS

[trevor manz @trevmanz]

I'm finally ready to introduce #anywidget - a new #Python library that makes creating and sharing custom @ProjectJupyter Widgets easy. No fiddling with messy build configs, packaging, or bundlers. Just start coding!

https://t.co/X4JHphXLYm

[Saez-Rodriguez Group @saezlab]

Building a knowledge graph for biomedical tasks usually takes months or years. 😰 What if you could do it in weeks or days? 🏃 We created BioCypher (https://t.co/9eGe9RDkNj) to make it easier than ever, but still flexible and transparent. 🧵⬇️

[Michael Barton @bioinformatics]

It's time we adopted more recent algorithms for FASTQ compression

https://t.co/EGDJrhCkSq

[Cyril Matthey-Doret @[email protected] @cmdoret]

@scrumtuous @microlinux_eu I think people use Github mainly because it has more users. Both are good IMO, but on a related note https://t.co/UqYSU6KD64

[Cyril Matthey-Doret @[email protected] @cmdoret]

@ThacienN @driscollis Indeed, this is the definition of multiprocessing.cpu_count() 😁

[Morgan Colp @Morgan_Colp]

Published online @genomeresearch yesterday: Our two high quality reference genome sequences for Acanthamoeba castellanii Neff and C3, and an exploration of genome folding changes in response to Legionella infection https://t.co/QLn52U2OrK

[RenkuIO @RenkuIO]

Do you work with Renku datasets ? 🐸💾

Then you may want to use dataset "tags" to export and share stable versions of your data!

Learn how to use dataset tags for data versioning on Renku 🏷️

https://t.co/nytneNVbhu

[Cyril Matthey-Doret @[email protected] @cmdoret]

@yokofakun @marianattestad Softwarecarpentry has a nice Make tutorial :) https://t.co/1B1rTZFjjb

[Cyril Matthey-Doret @[email protected] @cmdoret]

@cabbagesofdoom I've enjoyed duckdb so far https://t.co/Fy3mjdkUcX

[The Alper Lab @LabAlper]

Plastic pollution endangers wild and human life more every day. Can we clean this up? What to do with the waste once collected? With the Ellington,@at_lynd, and Zhang labs, we’ve developed an enzyme that can break down PET plastic: FAST PETase. https://t.co/rsICQ0ATUk @EnergyUT

[RenkuIO @RenkuIO]

Are you looking to enhance your digital classroom experience? Then we share your passion for technology and its role in teaching.

Check out this post to learn how to automate your digital classroom with Renku and Gitlab
https://t.co/SdFAv7F5hy