Corey Hudson

Programs and genomes and evolution and networks and comics and records and books, public health & biofuel. Tweets are my own.

[Corey Hudson @coreymhudson]

Excited to see @EvoscaleAI sponsor PET 2025 with free ESM inference for all teams. This is how we make protein design benchmarks fair and rigorous.

[The Align Foundation @Align_Bio]

📣 Evolutionary Scale is supporting the 2025 Protein Engineering Tournament!

Teams get sponsored ESM inference through @EvoscaleAI's API (Forge), bringing frontier protein AI models into the competition.

Level playing field, real experiments, open results. Register now 👇

[Aviv Spinner @AvivSpinner]

1/5 Biological data is noisy, redundant, and ever-growing. 🗣️

In our new paper (first paper of my post doc!! ⚡️), we track model performance across 14 years of UniRef100 snapshots to ask: how does pLM performance scale with training data?

[The Align Foundation @Align_Bio]

1/4
🚀 Announcing the 2025 Protein Engineering Tournament. This year’s challenge: design PETase enzymes, which degrade the type of plastic in bottles. Can AI-guided protein design help solve the climate crisis? Let’s find out! ⬇️

#AIforBiology #ClimateTech #ProteinEngineering #OpenScience

[Corey Hudson @coreymhudson]

@guyleonard @karinlag Quality lines can start with '@' so I would be careful with this one.

[Corey Hudson @coreymhudson]

@clovis_cormoran https://t.co/C6adCOMXtM

I'll send you my Dogecoin information in DM.

[Corey Hudson @coreymhudson]

@MizzouAandS Nicely done @JChrisPires !

[Corey Hudson @coreymhudson]

@clovis_cormoran @Protohedgehog @mrgunn @seis_matters @Megan_Byrd23 @melbee85 @AcademicPain @brembs I did an informal study of NAR db issue using the date function in https://t.co/OoQDHw0cSx and found attrition could get very high. I want to say close to 50% after 1 year of publication, but I never published it and don't have the numbers...it is high, whatever the num is.

[Corey Hudson @coreymhudson]

@clovis_cormoran @Protohedgehog @mrgunn @seis_matters @Megan_Byrd23 @melbee85 @AcademicPain @brembs There are labs that generated important DBs. But when the money runs out, research interests change and postdocs and sysadmins disappear. There are v. few grants for DB maintenance, and few labs want to spend their time maintaining a website.

[Corey Hudson @coreymhudson]

@k8hert Sublime3 + a decent Python linter. It's made my life much easier.

[Corey Hudson @coreymhudson]

@mycomancy wow!

[Corey Hudson @coreymhudson]

@clovis_cormoran try searching for information about it from a gov't computer.

[Corey Hudson @coreymhudson]

At #nips2016 listening to a talk about ethics in deep learning, strikingly similar to a convo @clovis_cormoran and I once had.

[Sandia National Labs @SandiaLabs]

Cultivating solutions in #energy & homeland #security: Sandia chronicles 20 years of #bioscience research 🌱 https://t.co/XD8CFSPlUV

[Corey Hudson @coreymhudson]

@WrightingApril I may reread the whole series, I was that floored!

[Corey Hudson @coreymhudson]

The associated software repo is here: https://t.co/9orRrUPDoz

[Corey Hudson @coreymhudson]

Check out Leanne & the Co-Optima team's publication on machine learning chemical classifiers in Energy and Fuels https://t.co/X2PmRCpzNC